Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1277 |
Symbol | nusB |
ID | 5611101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1516303 |
End bp | 1516707 |
Gene Length | 405 bp |
Protein Length | 134 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640932130 |
Product | transcription antitermination protein NusB |
Protein accession | YP_001473016 |
Protein GI | 157374416 |
COG category | [K] Transcription |
COG ID | [COG0781] Transcription termination factor |
TIGRFAM ID | [TIGR01951] transcription antitermination factor NusB |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000199863 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000534165 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAGCCTT CTGAGCGCCG TAAGGCCCGC CGTTTAGCCG TTCAAGCCAT TTACTCTTGG CAGTTAAGTG GAAATAACAT TGCTGATGTT GAGCATGAAT TTCTAACTGA GCAAAAGATT GATGGTATCG ATGTTGCCTA CTTCCGTGAG CTACTATCGG GAACAGCGAC AAAACAGGCT CAAATAGACG AGCAAATTAT CCCTCACATT GAGCGTCCTT ATAATGAGGT CTCTCCAATT GAGAAAGCCG TGTTAAGACT GGCGACTTAT GAGCTTACAT TCCGTAAAGA TGTGCCTTAT AAAGTTGCAA TTAACGAAGC TATCGAATTA GCTAAAGCGT TCGGTGCTGA AGATGGCCAT AAGTTTGTAA ACGGTATTCT CGACAAGATT GTAGGTCGTA AGTAA
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Protein sequence | MKPSERRKAR RLAVQAIYSW QLSGNNIADV EHEFLTEQKI DGIDVAYFRE LLSGTATKQA QIDEQIIPHI ERPYNEVSPI EKAVLRLATY ELTFRKDVPY KVAINEAIEL AKAFGAEDGH KFVNGILDKI VGRK
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