| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1274 |
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| Symbol | |
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| ID | 5611092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1513757 |
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| End bp | 1514419 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932127 |
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| Product | riboflavin synthase subunit alpha |
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| Protein accession | YP_001473013 |
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| Protein GI | 157374413 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0307] Riboflavin synthase alpha chain |
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| TIGRFAM ID | [TIGR00187] riboflavin synthase, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000236102 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000000155009 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTTACTG GGATCATAGA GTCAGTCGGT ACACTGAGAA AAATTGAACG TTTAGGTGAT
GACATTCGCT TGAACGTTGC CAGTGGTAAA CTCGATTTAG GCGATGTTCG TTTAGGCGAC
AGTATTGCAA CCAACGGAGT CTGTCTCACC GTCGTTGAGT GTCTGAGTGA TGGTTATGTT
GCAGACATTT CGGCTGAAAC CGTAAGTTTA ACCGGGTTTG CCAAGTATCA GGTCGGCACT
ATGGTCAATC TGGAAAAAGC GGTGACCCCG ACGACCCGTC TTGGTGGTCA TATGGTCAGC
GGTCACGTAG ACGGCATCGC TTCTGTTGAT GACAGACAGT TCCGTGGTAA GGCTATTGAG
TTTTGGCTCA CAGCACCTTC GATCTTAGCA CGCTATATTG CTCATAAAGG TTCGATCACT
ATTGACGGTG TCAGTCTTAC AGTCAATGAA GTGATCGATA ATCGCTTTAG ATTAACCATA
GTGCCTCACA CCGCAGGTGA AACGACACTG GTCAGTCTGA AGGCGGGTGA TGCAGTAAAC
ATCGAAGTGG ATCTTATTGC ACGTCACTTA GAAAGATTAA TGACTTACTC AAGCGACACG
GCCGGAGTGC CAGAGTCCAA TGTGACTATG GATCTGTTAG CTCGCTCAGG TTTTTTGCGT
TAA
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| Protein sequence | MFTGIIESVG TLRKIERLGD DIRLNVASGK LDLGDVRLGD SIATNGVCLT VVECLSDGYV
ADISAETVSL TGFAKYQVGT MVNLEKAVTP TTRLGGHMVS GHVDGIASVD DRQFRGKAIE
FWLTAPSILA RYIAHKGSIT IDGVSLTVNE VIDNRFRLTI VPHTAGETTL VSLKAGDAVN
IEVDLIARHL ERLMTYSSDT AGVPESNVTM DLLARSGFLR
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