| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1273 |
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| Symbol | |
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| ID | 5611091 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1512628 |
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| End bp | 1513752 |
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| Gene Length | 1125 bp |
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| Protein Length | 374 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932126 |
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| Product | diaminohydroxyphosphoribosylaminopyrimidine deaminase |
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| Protein accession | YP_001473012 |
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| Protein GI | 157374412 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000865522 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000025095 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTGGTCTG TAGAAGATAT TGAAATGATG AGCCGCGCAA TTAAACTTGC GCGTAAAGGG
CTATACACCA CCAGGCCTAA CCCTTGTGTT GGCAGTGTGG TGACTAAAGC AGGTCAGGTC
ATTGGTGAAG GATTTCATAT CAGGGCGGGT GGCCCTCATG CCGAAGTGTA TGCATTAGCC
ATGGCGAGCG ACAATGCTAA GGGCGCTACC GCCTATGTCA CGCTCGAGCC ATGCAGTCAT
CATGGCCGCA CTCCTCCATG CGCAGAAGCC TTGATAAAGG CTGGTGTTGC ACGTGTGGTT
GTGGCAATAG AAGATCCAAA CCCTCAGGTA TCCGGACGCG GGATTAAAAT GCTCACGGAC
GCCGGTATCC AGGTTGACGT TGGCCTGTTG AATGTCGAGG CCGGCGATAT CAATCCGGGC
TTTATGAAGC GTATGCAGTC CGGACTGCCA AAGATCACTG TGAAGTTAGC GTCTAGCTTA
GATGGTAAGA CAGCCCTTAA CAATGGCGTC TCCAAGTGGA TAACAGGCAG TGAAGCCAGA
CGTGATGTTC AGCGCCTAAG GGCCAGGCAT TGCGCCTTAG TAACCGGCAT CGAGACTGTG
CTTATTGATG ACCCATCGCT GAATGTGCGT CATAGTGAGC TGGGCGTGTT GGCCAACGAG
CTTGCCCCGA GTGAGATCCA TCAACCACTT CGGGTCATAC TGGATAGCAG AGCAAGGTTA
ACCAAGGGGT TTAAACTTTT TTCAGTCAAT AGTCCCATCT TGCTGGTCTC CTGTACCGAT
TACCCTCTCG AAGAGCAAAC GGCCTGGCCT GAGCATGTAT CCCATCTCAA GTTGCCAGCC
GATGATTGCG GTCGTGTCGT TTTATCACTC CTGTTTAAGC ATCTTGGACA ATCATGTAAC
TCAGTGCTTA TCGAAGCCGG TGCGACCTTG GCGGGGAGTG TTATCGAGCA AGGCCATGGG
GATGAGCTGG TATTATATCA AGCGATGAAA ATATTAGGGT CGGCCGGGCG TAATTTAATC
TCACTGCCCG GCTATGAAGC GATGGCAGAC ATTCCAGCCG TCGAGTTAAT TGATGAGCGT
AAATTGGGTA AAGATACCCG TTTAACGTTA AAAATAAGGT CATAA
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| Protein sequence | MWSVEDIEMM SRAIKLARKG LYTTRPNPCV GSVVTKAGQV IGEGFHIRAG GPHAEVYALA
MASDNAKGAT AYVTLEPCSH HGRTPPCAEA LIKAGVARVV VAIEDPNPQV SGRGIKMLTD
AGIQVDVGLL NVEAGDINPG FMKRMQSGLP KITVKLASSL DGKTALNNGV SKWITGSEAR
RDVQRLRARH CALVTGIETV LIDDPSLNVR HSELGVLANE LAPSEIHQPL RVILDSRARL
TKGFKLFSVN SPILLVSCTD YPLEEQTAWP EHVSHLKLPA DDCGRVVLSL LFKHLGQSCN
SVLIEAGATL AGSVIEQGHG DELVLYQAMK ILGSAGRNLI SLPGYEAMAD IPAVELIDER
KLGKDTRLTL KIRS
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