Gene Ssed_1272 details

Gene Information

• Locus tag: Ssed_1272
• Symbol: nrdR
• ID: 5611090
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sediminis HAW-EB3
• Kingdom: Bacteria
• Replicon accession: NC_009831
• Strand: +
• Start bp: 1512113
• End bp: 1512562
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640932125
• Product: transcriptional regulator NrdR
• Protein accession: YP_001473011
• Protein GI: 157374411
• COG category: [K] Transcription
• COG ID: [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
• TIGRFAM ID: [TIGR00244] transcriptional regulator NrdR

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.00612779
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 2
• Fosmid unclonability p-value: 0.000000016525
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGCATTGCC CATTTTGCAG CGCAACAGAT ACAAAAGTGA TCGATTCACG TTTGGTCGCA 
GACGGTCATC AAGTCAGGCG TCGCCGTGAG TGCGCCGAAT GTCATGAGAG ATTTACCACA 
TTTGAAGGGG CCGAACTTGT CATGCCGCGA GTCGTCAAGC AAGATGGCAG CCGTCAACCA 
TTCGATGAAG AGAAGCTCAG AGGCGGTATG CTAAGGGCCG TTGAAAAACG TCCGGTGTCG 
ATGGATCAAA TTGAGCAGGC GCTGACTAAA ATTAAATCGA CTCTACGTGC AACTGGCGAG 
CGTGAAGTTA AGTCGGAGAT GATCGGTAAT CTGATGATGG ATCAGCTGGT TAATCTGGAC 
AAGGTGGCCT ATATTCGGTT TGCCTCGGTC TATCGTGCAT TTGAAGATGT ATCTGAATTC 
GGTGATGCTA TCGCTAAACT GCAGAAATAA 

 

Protein sequence

MHCPFCSATD TKVIDSRLVA DGHQVRRRRE CAECHERFTT FEGAELVMPR VVKQDGSRQP 
FDEEKLRGGM LRAVEKRPVS MDQIEQALTK IKSTLRATGE REVKSEMIGN LMMDQLVNLD 
KVAYIRFASV YRAFEDVSEF GDAIAKLQK