| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1270 |
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| Symbol | |
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| ID | 5614043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1508521 |
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| End bp | 1510188 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640932123 |
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| Product | putative ABC transporter ATP-binding protein |
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| Protein accession | YP_001473009 |
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| Protein GI | 157374409 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000158997 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTCAGT TTGTTTATAG CATGCTTAGA GTGGGCAAGA TTGTTCCCCC CAAGAAGCAG
ATCCTAAAAG ATATCTCATT AAGCTTCTTC CCAGGAGCTA AGATCGGTGT ACTCGGTCTG
AACGGCTCGG GTAAATCAAC CCTGCTTCGC ATCATGGCGG GTCTGGATAC CGAGATTGAA
GGTGAAGCAC GCCCGATGCA AGATCTTAAA ATCGGTTACC TGCCCCAAGA ACCTAAACTC
GATCCGACTC AAACGGTTCG TGAAGCGATC GAAGAGGCGG TTTCTGAAGC TAAAAATGCC
CTCACCCGAC TCGATGAGGT TTACGCGCTA TATGCTGAGC CCGATGCAGA CTTCGACGCA
CTTGCTAAAG AGCAGGGACA ACTGGAAGCC ATTATTCACT CGCAAGATGC CCATAACCTC
GACAACGTAC TCGAACGCGC GGCTAACGCA CTGCGTCTTC CCGATTGGGA TGAAAAAATC
GAAGTACTGT CGGGTGGTGA ACGTCGCCGT GTCGCCATCT GTCGCTTGCT GCTAGAGAAG
CCTGATATGT TGCTTCTCGA TGAACCTACC AACCACTTAG ATGCTGAGTC TGTCGCATGG
CTTGAGCGAT TCCTGCAGGA TTATACCGGC ACAGTTGTGG CCATTACCCA CGATAGATAT
TTCCTGGATA ATGCAGCCGG TTGGATCTTA GAACTCGACC GCGGTGAAGG CATACCGTGG
GAAGGCAATT ACTCTTCATG GCTTGAACAG AAAGACGCCC GACTTCAACA GGAGTCGGCA
ACCCAGAGTG CTCGTCAGAA AACCATTGCC AAAGAGCTTG AATGGGTACG ACAGGGTGCT
AAGGGTCGTC AATCTAAGGG TAAGGCACGT ATGGCTCGTT TCGAAGAGCT TAATACCAAC
GATTACCAGA AGCGTAATGA AACCAACGAG CTGTTTATTC CACCAGGGCC ACGCTTGGGT
GACAAGGTGA TCGAGGTTAA AAACCTAACC AAGTCTTACG GCGATCGTGT ACTCATCGAC
GACCTGAGCT TCTCGGTTCC TAAAGGCGCT ATCGTGGGCA TTATCGGCGC AAACGGCGCA
GGTAAATCGA CGCTGTTTAA GATGATATCC GGTGCAGAGC AACCCGATAG CGGCTCGGTC
GAAGTGGGTG AAAGCGTACA GCTTGCCTCT GTCGAGCAGT TCCGTGATTC GATGAATGAC
AAGAACACGG TATGGCAAGA GATCTCCGAA GGCCAGGACA TCATGCGCAT CAATAACACA
GAGATCCCGA GTCGTGCCTA TGTTGGCCGT TTCAACTTCC GTGGTGGCGA TCAGCAGAAG
ATCATCGGCA CTCTATCCGG TGGTGAACGT AACCGTGTTC ATCTGGCTAA GCTGCTGCAA
GCCGGCGGTA ACGTCTTACT CCTCGATGAG CCAACCAACG ACTTAGACGT TGAAACCTTG
CGAGCACTGG AAGAAGCCCT GCTTGAGTTC CCTGGCTGTG CCATGGTCAT CTCCCATGAC
CGTTGGTTCC TCGACCGCAT CGCGACTCAT ATTCTTGATT ATCGGGATGA GGGAAAGGTC
AGCTTCTATG AAGGTAACTA CACCGAGTAC TCAACCTGGT TGAAAGATAC CTACGGTACC
GATGTCGTCG AGCCTCATCG CCTTAAGTAC AAGCGAATGA ACAAATAG
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| Protein sequence | MAQFVYSMLR VGKIVPPKKQ ILKDISLSFF PGAKIGVLGL NGSGKSTLLR IMAGLDTEIE
GEARPMQDLK IGYLPQEPKL DPTQTVREAI EEAVSEAKNA LTRLDEVYAL YAEPDADFDA
LAKEQGQLEA IIHSQDAHNL DNVLERAANA LRLPDWDEKI EVLSGGERRR VAICRLLLEK
PDMLLLDEPT NHLDAESVAW LERFLQDYTG TVVAITHDRY FLDNAAGWIL ELDRGEGIPW
EGNYSSWLEQ KDARLQQESA TQSARQKTIA KELEWVRQGA KGRQSKGKAR MARFEELNTN
DYQKRNETNE LFIPPGPRLG DKVIEVKNLT KSYGDRVLID DLSFSVPKGA IVGIIGANGA
GKSTLFKMIS GAEQPDSGSV EVGESVQLAS VEQFRDSMND KNTVWQEISE GQDIMRINNT
EIPSRAYVGR FNFRGGDQQK IIGTLSGGER NRVHLAKLLQ AGGNVLLLDE PTNDLDVETL
RALEEALLEF PGCAMVISHD RWFLDRIATH ILDYRDEGKV SFYEGNYTEY STWLKDTYGT
DVVEPHRLKY KRMNK
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