| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1266 |
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| Symbol | |
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| ID | 5612463 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1502284 |
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| End bp | 1503399 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932119 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001473005 |
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| Protein GI | 157374405 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000032302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00027333 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAA GTCTGATCTT GCTCCCTATT ATTTTGTTGT TCGCCGTTAT TGCTTCATTC
AGCAGTTTCA CTCAGGCCAA GAAGCCCGGG GATAAATCTA CCCGCGCCCC CAGAGTGGTT
CCAGTGGTCA CTGGCGTAGT CGAGCAACAT ATGCTTTCTC AAAAAATTGC ACTGATAGGA
AAGCTGGAGG CGGACAGGTC GGTATTTATC GCTCCCGAGG TGGCAGGCAA GATTAAAGCC
ATTAAGGTCA CGGCTAATCA GGAGATAACG GCTGGGCAAC TGCTGATCCA GCTCGAAGAT
GCTAAGCCTC AGGCCAGTGT TGCAGAGGCT AAGGCATACC TCTTCGATGA AAAGCGTAAG
CTAAAAGAGT TTCAGAAACT GATAAGCCAA AGTGCAATCA CTCAAACGGA AATTGATGCG
CAGAAGGCCA GTGTCGATAT TGCAAAGGCA AGGCTCGCCG CTGCACAAGC CGAGCTCGAT
TTTCATTATA TTAAAGCGCC GTTTTCCGGA ACCGCGGGTT TACTCGATTT CAGCTTAGGG
AAGATGGTTA CCGCCGGCAG TGAGCTGTTG TCGCTCGATG ACCTGTCATC CATGAGACTC
GACCTTCAGG TTGCGGAAAA TTACCTCTCT ATGTTAAGTG TAGGTATGAC AGTAACGGCG
ACGAACCGTG CCTGGCCCGG TGAAGTCTTT ACCGGTGAGT TAGTGGCTAT CGATCCGCGT
ATCAATCAGG AAACATTGAA CCTAAAAGTT AGGGTTAGCT TTGGAAATCA AAGCCACAAC
AAAGGTCATA AGCTCATGCC TGGCATGTTG ATGTCGGCCA GTCTGGGTTT CCCTGCTGTA
TCTGAACCCG TTATCCCGGT TCAGGCCATC GAGTATTCCG GCACTAAGCG CTTCGTGTAT
GTTGTCGGCG CGGATAAGCT TGCCAAACGC ACCCAAGTGA CACTCGGTGC CAGAATTCAG
GATGAAGTCC TCATTACCGA AGGCGTAGAT GTGGGAGAGC GTATCGTTGT TCAGGGACTG
GTCAATATGC GTGATGGCCT TAAGGTCAAC GATCTCACCG AGCAACTGGC TTCAGCCGAC
AATGAGTTAA TTGAGCGCGC AGGAGACAGA GGTTAA
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| Protein sequence | MKKSLILLPI ILLFAVIASF SSFTQAKKPG DKSTRAPRVV PVVTGVVEQH MLSQKIALIG
KLEADRSVFI APEVAGKIKA IKVTANQEIT AGQLLIQLED AKPQASVAEA KAYLFDEKRK
LKEFQKLISQ SAITQTEIDA QKASVDIAKA RLAAAQAELD FHYIKAPFSG TAGLLDFSLG
KMVTAGSELL SLDDLSSMRL DLQVAENYLS MLSVGMTVTA TNRAWPGEVF TGELVAIDPR
INQETLNLKV RVSFGNQSHN KGHKLMPGML MSASLGFPAV SEPVIPVQAI EYSGTKRFVY
VVGADKLAKR TQVTLGARIQ DEVLITEGVD VGERIVVQGL VNMRDGLKVN DLTEQLASAD
NELIERAGDR G
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