| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1256 |
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| Symbol | |
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| ID | 5614103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1488469 |
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| End bp | 1491585 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932109 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_001472995 |
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| Protein GI | 157374395 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.393229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.26342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAGTG AATTCTTTAT TAACAGGCCT AAGTTCGCCT TTGTTATTTC TACTGTGTTG
ACCTTGGTTG GACTTATCTC CATTCCTATT TTATCAGTGT CTGAGTTTCC TGAAATAGCG
CCACCTCAAA TTAACGTGTC TACGAGTTAT TCCGGTGCGA GTGCCGGTGT GGTTAAAGAT
ACCATAGCTC AGCCACTCGA GGCTGAGGTC AATGGCGTCG AAGGTATGCT CTATATGGAG
TCTAAGAGTG CCAACGATGG AAGTTACGCA TTAAATGTAA CATTCGAAGT GGGCACAGAT
GCCGATATGG CGCAGGTTAA AGTACAAAAC AGAGTGCAGC AGGCGATGCC GCGTCTGCCC
GAAGAGGTTA AACGTCAGGG GGTTAAAGTC GAGAAACAGA GCCCCAATAT GTTGATGGTG
GTGAATCTGG TTTCCCCCAA CGAGACCTTC GACTCGCTGT TTATTACTAA CTATGCCGGA
TTGAATATCA AGGATGCGCT TGCTCGTCAA AATGGTGTCT CTAAGGTTCA AGTGATCGGC
TCGCTCGATT ACGCAATTCG GATCTGGCTC GATCCCAATC AAATGGCAAG CTTTGGTGTG
ACAGCAAAAG ATGTGATTGC TGCTTTGCAG GAGCAAAATA TCCAAGTTGC GGCTGGACGC
ATCGGTGCTG CGCCTGTGGA TCCAGATCAG CAGTTTCAGT ACACCTTACA AACTAAAGGG
CGCTTGAAAG ATCCACAGGA GTTTAAGGAT GTTATGATCC GAGCGAACAA CGATGGTTCC
AAAGTCGTTG TCAGCGATGT GGCTCGTGTC GAGTTAGGTT CTCAAACCTA TGATGCACAA
GGTAAGTTAA ACAATAAGCC TTCGGCAATT ATTGCTGTTT ATCAGTCACC TGATGCTAAT
GCATTGGAAG TTGCCGCCGG AATTAAAACC GAGATGGCTA AGTTGTCAGA GCGTTTTCCA
ACGGATCTGG AATACGAAGT GCTTTATGAC ACGACTGAGT TCGTTGAAAC TTCGATTACA
GAGGTAGTAC AGACCCTCTT CATCTCTATC TCGCTGGTTG TATTAGTTGT TTATATCTTC
TTGCAGGATG CACGCTCGAC TCTGGTTCCC GGAATTGCGA TTCCGGTTTC CTTAATTGGT
ACCTTTGCGT TCCTGCTCTT GTTTGGCATG AGCATTAATA CCGTGTCTCT GTTCGCATTG
ATCTTAGCCA TTGGTATTGT GGTAGATGAT GCGATCGTGG TGGTAGAGAA CGTGACTCGT
CTGATGCAGG ATGAAGGTCT CTCTCCAAAG GAGGCGACAT CTAAGGCGAT GAAAGAGGTT
ACCGGCCCTA TTATTGCGAC CACCTTGGTG TTGCTTGCTG TTTTTGCTCC CACGGCTGTC
ATGCCTGGTA TTACCGGACA GATGTATGCA CAGTTCTCTG TGACCATCTG TATCGCTGTA
CTTATCTCCT CAATAAACGC ACTAACCTTG AGTCCGGCGC TATGTGCCTC GTTACTCAGA
GCACCTAAAC AGCATGAAAC AGGTTTTCAT GCCTCGTTTA ATAAATACTT TGAACGTTTC
ACCGGTAAGT ACATGGGGCT CGTCTCATCA TTGACCCGTA AGCTGTCTTT AGTGGTTGTG
GTTTATGTCT GTTTAATTGC CGTCACGGGC GGAGTGGCAA AAATCTTACC TTCAGGCTTT
GTGCCTATGG AAGATAAGAA AGCCTTTATG GTCGATATCC AACTTCCCGA TGGTGCATCA
CTTAACCGTA CAGAAGAGGT GATGAAAGAG TTAGTCGAGT TGACTCTGGC TGAACCTGGT
GTTGAGAATG TGATCCACGC CAGTGGTTTC AGTATCTTAA CCGGTTCAGT ATCGTCCAAT
GGTGGCTTGA TGATCGTTAC CCTCTCCTCC TGGGAGGAGC GAGATACTCC AGATATGGTC
GAGGCGGCTA TCGTGGCTAA GCTTCAGGTC AAATATGCAG CTAACCCTTC GGTGAAAGCC
ATGGCGTTCT CATTGCCGCC AATTCCGGGG GTGGGTAGTG TGGGAGGATT TGAGTTTGTG
CTGCAAGATA CTCAAGGTCG CTCACCTCAA GAGTTGGCTT CTGTTATGCG AGCCCTGATA
ATGGAAGCTA ATTCGCAGCC AGAAATCGCC ATGGCATTTA GTAACTTCCG TGCCGATGTT
CCGCAGATGT ATGTGGATGT CGATAGGGAT AAAGCCAAGG CGTTAGGGAT CTCATTGAAC
GAGATATTCA CAACTATGCA GACCATGCTT GGGTCTATGT ATGTGAATGA CTTTAACCGT
TACGGTAAGG TGTTTAGAGT TATTGTGCAG GCCGAAGGTG AGTTTCGTAA TTCGGATAGG
GATATTTCCA GTTTCTACGT GCGCTCGGCA AGTGGTGAGA TGGTGCCTCT GAGCACGCTG
GTAACGGTGA CGCCTATCTT AGGCCCCGAT GTGATGAACT CATACAATAT GTTTAGTTCG
ACTACCATTA ACGGCTTCCC GGCGGCAGGG TTTAGCTCGG GGGACGCGAT TAAGGCGATG
GAGCGTGCGG CAGAGCAGAG TCTGCCTACA GGTTATAGCT ATCAATGGAC CGGTCAGACG
TTTCAGGAGA TTAAGGCGGG CAATTTAGCG CCACTTATCT TTGGTTTGGC GTTAGTGTTT
ACTTATCTTT TCCTGGTGGC TCAGTATGAG AGCTGGACAA TTCCGTTTGC GGTAATGCTG
GCGGTACCTA TTGCATTACT TGGGGCCTTC CTTAATATTT GGCTGATGGG AACAGACCTG
AACCTCTATG CTCAGATTGG TTTGGTGCTC TTGATTGGAC TGGCTTGTAA GAATGCAATC
TTGATCGTTG AATTTGCAAA ACAGCTAAGA GAAGAGGGGA AGAGTATTCT CGATGCGGGT
GAAACGGCTG CCAGACTGCG TTTTCGTGCG GTATTAATGA CAGCCTTCTC TTTCCTGCTC
GGTGTGCTTC CTCTGGTCAT TGCGACTGGT GCTGGAGCGG GGAGTCGTCG TGCTCTGGGT
TACTCAGTGT TCGGCGGCAT GCTTGCAGCG ACTATTGTTG GTACTCTGCT GGTTCCTGTG
TTTTATGTGA TGATGCAAAA GCTCAGAGAG CGAGTGAAAG GTGAGGCGAA AGCTTAG
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| Protein sequence | MISEFFINRP KFAFVISTVL TLVGLISIPI LSVSEFPEIA PPQINVSTSY SGASAGVVKD
TIAQPLEAEV NGVEGMLYME SKSANDGSYA LNVTFEVGTD ADMAQVKVQN RVQQAMPRLP
EEVKRQGVKV EKQSPNMLMV VNLVSPNETF DSLFITNYAG LNIKDALARQ NGVSKVQVIG
SLDYAIRIWL DPNQMASFGV TAKDVIAALQ EQNIQVAAGR IGAAPVDPDQ QFQYTLQTKG
RLKDPQEFKD VMIRANNDGS KVVVSDVARV ELGSQTYDAQ GKLNNKPSAI IAVYQSPDAN
ALEVAAGIKT EMAKLSERFP TDLEYEVLYD TTEFVETSIT EVVQTLFISI SLVVLVVYIF
LQDARSTLVP GIAIPVSLIG TFAFLLLFGM SINTVSLFAL ILAIGIVVDD AIVVVENVTR
LMQDEGLSPK EATSKAMKEV TGPIIATTLV LLAVFAPTAV MPGITGQMYA QFSVTICIAV
LISSINALTL SPALCASLLR APKQHETGFH ASFNKYFERF TGKYMGLVSS LTRKLSLVVV
VYVCLIAVTG GVAKILPSGF VPMEDKKAFM VDIQLPDGAS LNRTEEVMKE LVELTLAEPG
VENVIHASGF SILTGSVSSN GGLMIVTLSS WEERDTPDMV EAAIVAKLQV KYAANPSVKA
MAFSLPPIPG VGSVGGFEFV LQDTQGRSPQ ELASVMRALI MEANSQPEIA MAFSNFRADV
PQMYVDVDRD KAKALGISLN EIFTTMQTML GSMYVNDFNR YGKVFRVIVQ AEGEFRNSDR
DISSFYVRSA SGEMVPLSTL VTVTPILGPD VMNSYNMFSS TTINGFPAAG FSSGDAIKAM
ERAAEQSLPT GYSYQWTGQT FQEIKAGNLA PLIFGLALVF TYLFLVAQYE SWTIPFAVML
AVPIALLGAF LNIWLMGTDL NLYAQIGLVL LIGLACKNAI LIVEFAKQLR EEGKSILDAG
ETAARLRFRA VLMTAFSFLL GVLPLVIATG AGAGSRRALG YSVFGGMLAA TIVGTLLVPV
FYVMMQKLRE RVKGEAKA
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