| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1253 |
|---|
| Symbol | |
|---|
| ID | 5614100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1484582 |
|---|
| End bp | 1485883 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932106 |
|---|
| Product | NADH dehydrogenase |
|---|
| Protein accession | YP_001472992 |
|---|
| Protein GI | 157374392 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1252] NADH dehydrogenase, FAD-containing subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.674072 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGAAA TGGTCAATAT AGTCATCGTC GGTGGTGGTG CTGGTGGAAT GGAGATCGCC
ACAAAACTAG GTCGTAAACT TGGAAAAAAG GGGAAAGCTC GGGTCACTCT AATTGATTGT
GCCGAGAGCC ATGTCTGGAA GCCATTGCTA CATGAGGTTG CCACCGGCGC ACTGGATATC
GGTATCGATG CCCTCAGTTA TCGAGGTCAT GCCGCCAATC ATGGTTATCA TTTTCAGCAA
GGTGCTATGA CCAATATTGA TCGTGATAAT AAACAGGTTA TCTTAGCGCC TATTATGGAT
GATTCCGGTG AAGAACTGTT GCCGGCACGT CGTATCAGTT ATGACTATCT GGTTATTGCC
ATCGGCAGTA TTGCCAATGA CTTCAAGATC CCGGGTGTTC GTGAGCACTG TGTCTTCTTA
GACAGTACAG AGCAGGCTAT GCAGATCCGC AGCATGTTAC TAAATAAATT CATGCGCTAT
GCGAGCCACC ATCAGCTGGA TGAGAAGATA AAAATTTCAG TTGTTGGAGC GGGAGCCACC
GGAGTTGAGA TGTCTGCCGA AATGCATCAC GCCGTCGATC AGCTCAGCGG TTTTGGTTAC
AAAATCGATA GCAGCCTGTT AGAGATAACC TTGGTCGAAG CCGATGAGCG AATCTTACCT
AAAGTAGAGA AAAGAGAGAT CTCGGATTCG GTAGCGAAGG AGCTTACCGC AATTGGTGTC
AATGTGCTTA CCAGTACCCG TATCAGTGAA GTCACCCCCG AAGGATTACA TACTACCGAA
GGTCAACAGA TCCCTGCGGA TATGGTTATC TGGTCAACGG GAGTTAAGGC ACCCGATTTC
TTGAATGAAA TTGGTGAGCT TGAGAGTAAC CATATCAACC AGGTTATGGT TAAGAAAAAT
ATGCAGACAA CCCGCGATCC CCATATCTTT GCCATTGGAG ATTGCGCAGC CTGCCCACAG
GAAGACGGAA GCTGGGTTCC GCCAAGAGGT CAGTCTGCAA GACAGATGGC ATTGATGACA
GCGGATAACA TCAGCCTGAT GCTGGAAGAT AAATCACCTA GTCACGAATA CGTTTATAAA
GATCTGGGCT CATTGGTTAA CTTGTCTAAA TTTCATACCG TGGGTAACTT GATGTCATTC
ATGGGAGGAG GCGTATTGGT CGAAGGTAAG ATAGCCAGAT TCGTCTATAC CTCCTTGTAT
CGTAGACATT TGATCGAACT TCACGGGGTA TTTAAAGGGA CCTTGCTGAT GTTTGCCAAG
GGGATCAGCC GCATTATTCA TCCTCACTTG AAGCTCCACT AA
|
|---|
| Protein sequence | MQEMVNIVIV GGGAGGMEIA TKLGRKLGKK GKARVTLIDC AESHVWKPLL HEVATGALDI
GIDALSYRGH AANHGYHFQQ GAMTNIDRDN KQVILAPIMD DSGEELLPAR RISYDYLVIA
IGSIANDFKI PGVREHCVFL DSTEQAMQIR SMLLNKFMRY ASHHQLDEKI KISVVGAGAT
GVEMSAEMHH AVDQLSGFGY KIDSSLLEIT LVEADERILP KVEKREISDS VAKELTAIGV
NVLTSTRISE VTPEGLHTTE GQQIPADMVI WSTGVKAPDF LNEIGELESN HINQVMVKKN
MQTTRDPHIF AIGDCAACPQ EDGSWVPPRG QSARQMALMT ADNISLMLED KSPSHEYVYK
DLGSLVNLSK FHTVGNLMSF MGGGVLVEGK IARFVYTSLY RRHLIELHGV FKGTLLMFAK
GISRIIHPHL KLH
|
|---|
| |