Gene Ssed_1247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1247 
Symbol 
ID5609787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1478254 
End bp1479264 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content47% 
IMG OID640932100 
Productthreonine aldolase 
Protein accessionYP_001472986 
Protein GI157374386 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2008] Threonine aldolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0103654 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.613699 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGATT TTCGTAGCGA TACCGTGACC ATGCCGACAG AGGCGATGCG TAAAGCGATG 
GCGACTGCCG AAGTTGGGGA TGATGTTTAT GGTGATGATC CGACAGTAAA TCGTTTAGAG
GCACTGGCTG CTGAAATGTA TGGTTTCGAT GGCGCTTTGT TTACCTCATC GGGTACACAA
GCTAATTTGT TAGCCTTGAT GTCACATTGT GAGCGTGGCG ATGAATATAT CTGTGGTCAA
CAGGCTCATA ACTATAAATT TGAAGGCGGC GGCGCCGCGG TGCTTGGTAG CATCCAACCT
CAGCCCCTGA ACAATCAAGA TGATGGTTCG ATTTTACTGT CGGATATCAA AGGGGCAATC
AAGCCCGATG ACGTGCATTT TGCCAATACG CGACTGGTGA GTTTAGAAAA TACTATCGGC
GGTAAGGTGC TTCCCCAGAG TTATATTGCC GAGGCTCAAC AGTTAGCTTT TAACCATGGG
TTAAAAATTC ACCTCGACGG GGCGCGAGTT GCTAATGCGG CCGTTGCTCA GAATATTGCG
ATTAGCGAGA TCACTCAATA TTTTGATTCT GTCTCTATCT GCTTATCTAA AGGCCTTTGT
GCTCCGGTGG GCTCTATCCT GTTGGGTGAT GAACGCTTGA TAGGTAAAGC GAGACGCTGG
CGTAAAATGT TAGGTGGCGG AATGCGTCAG GCCGGTATAC TTGCTGCGGC AGCGAGTTTA
GCGATAACGG ATCAGGTTGA GCGCTTAGCC ATCGATCATG ATAATGCCGG TTATCTTGCA
GAGCAGCTGT CTATGCTGAC AGAGTTCAGA GTCGATCTCG CCCAAGTTCA GACAAATATG
GTATTCGCAC ATGTAAATGA TGGCGTAGAT ATAAGCTCCC TTGCCGTTAA ACTAAAGCAG
AGTGGGATCT TGATAAGCTC TGGTTCCACA CTCAGGTTAG TGACTCATGC CGATATAAGT
CGCGCCGATA TTGATACCTT TATTGGTGAA CTTAAGCGTT ATCTGAAATA G
 
Protein sequence
MIDFRSDTVT MPTEAMRKAM ATAEVGDDVY GDDPTVNRLE ALAAEMYGFD GALFTSSGTQ 
ANLLALMSHC ERGDEYICGQ QAHNYKFEGG GAAVLGSIQP QPLNNQDDGS ILLSDIKGAI
KPDDVHFANT RLVSLENTIG GKVLPQSYIA EAQQLAFNHG LKIHLDGARV ANAAVAQNIA
ISEITQYFDS VSICLSKGLC APVGSILLGD ERLIGKARRW RKMLGGGMRQ AGILAAAASL
AITDQVERLA IDHDNAGYLA EQLSMLTEFR VDLAQVQTNM VFAHVNDGVD ISSLAVKLKQ
SGILISSGST LRLVTHADIS RADIDTFIGE LKRYLK