Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1245 |
Symbol | |
ID | 5611570 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1476331 |
End bp | 1477155 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932098 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001472984 |
Protein GI | 157374384 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.016266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.622604 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAAAACT TGGAAGGTTT GATCGAGCAA GCACCAGAGC TTATCGTGGC CTATGGAATG AAAATTATTT TTGCAATTAT CATCTTTCTT GTCGGTAAGT ATCTGGCGGG TGTAGCTAAA AAAATATCAG ATAAGCTGAT GACTAAGCGA AAAATTGACC CAACAGTGGT CTCTTTCGTC TCTAATATTG CCTGGGCACT GGTATTCGCG TTCACGGTCG TTGCGACATT GGGACAGTTA GGCGTTCAAA CAGCGTCTTT AGTCGCCGTA ATTGGTGCCG CCGGTTTAGC CGTTGGCCTG GCGCTACAGG GTTCTCTGTC AAACTTTGCT TCTGGCGTCT TGATGGTACT GTTTCGTCCT TGTCGTGTGG GTGATTATGT GGATGCGGCC GGTATCTCTG GTACCGTCGA TGAGATCACT ATTTTCTCGA CCAAGTTGTT AACACCGGAC AATAAGCTGA TTATTGCACC TAACTCAGCG ATGATGGATG GAACTATTGT TAACTATTCT GCTATGGATA CGCGTCGTGT CGATTTAGTG ATAGGTGTGT CATACGATGC CAATTTAGCC GAAGCTAAGA AGGTATTGAC CACAATCGTT GAGAATAATC AGTACGTCTT AAAAGATCCT GCTTATACGG TTGCTATCTC AGAGCTGGCC GATTCATCGG TTAACTTTGT TGTACGTCCC TGGGTTAAGG GCAGTGATTA TTGGCCTGCA TATTTCGAAC TGCTTGAGCA GATTAAACTC GCTCTCGATG AAGCCAATAT CGGTATTCCA TATCCACAGA TGGATCTTCA TGTGAAGGAG ACGCCTTCAG TGTGA
|
Protein sequence | MENLEGLIEQ APELIVAYGM KIIFAIIIFL VGKYLAGVAK KISDKLMTKR KIDPTVVSFV SNIAWALVFA FTVVATLGQL GVQTASLVAV IGAAGLAVGL ALQGSLSNFA SGVLMVLFRP CRVGDYVDAA GISGTVDEIT IFSTKLLTPD NKLIIAPNSA MMDGTIVNYS AMDTRRVDLV IGVSYDANLA EAKKVLTTIV ENNQYVLKDP AYTVAISELA DSSVNFVVRP WVKGSDYWPA YFELLEQIKL ALDEANIGIP YPQMDLHVKE TPSV
|
| |