| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1234 |
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| Symbol | |
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| ID | 5614161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1467411 |
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| End bp | 1468523 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932087 |
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| Product | twitching motility protein |
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| Protein accession | YP_001472973 |
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| Protein GI | 157374373 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00304221 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.458065 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATGTTC GTCCCTTCTT AAAAATAATG GTGGAGCGTA AAGCATCGGA TCTATTTATC
ACTGCAGGCT TCCCACCCAG TGCAAAAATT GATGGTGAGT TGAGACCCTT AAGTGAGAGT
TCATTTACCC CCGCACAGGC ATTGGATTTT GTTGAATCTT TGATGACGGA TGTGCAGAAA
ACGGAGTTTC ATGAGAGTCG GGAGTGTAAC TTTGCTTTTG CCGCAAAAGA GCTGGGTCGT
TTTCGTGTCA GCGCCTTCTG GCAAAGAGAA GCGCCGGGCT GTGTCATGCG CAGGATTGAA
ACTAAAATTC CGGAAGTGGA AGATCTGAAG CTCCCACCCA TTTTAAAAGA CCTCGTGATG
AGTAAACGCG GGCTTATCAT CATGGTCGGT GGTACGGGAA CGGGTAAATC GACCTCGTTG
GCGGCGCTGG TGGGTTATCG TAATGCAAAC TCTCGAGGTC ATATCCTGAC AATTGAGGAT
CCCGTCGAGT TTGTTCACGA ACACCGCAAG AGTATTATTA CTCAGCGAGA AGTCGGTATC
GATACCGAGT CATTCGATGC CGCCCTTAAA AGTTCGCTTC GTCAGGCTCC GGATGTGATC
TTAATCGGTG AGATCCGAAG CCAGGAGACG ATGGAGTTTG CACTCTCATT TGCAGAAACC
GGTCACCTGT GTATGGCAAC GTTGCACGCA AACAATGCAA ACCAAGCACT GGACCGTATC
ATGCACTTAG TGCCGGAGAG TAAGCATCAA CAGCTGTTAT TCGACCTTTC ATTAAACTTA
CGAGGTATCG TCGCACAACA GTTGGTTCCC AAAGCGGACG GCACTGGTCG ACGTGCAGCC
ATTGAAATTT TGATCAACAC GCCAAGGATC TCAAGTTTGA TTGCGAAAAA TGAGCTGCAC
TCGCTAAAAG AGACGATGGC TAAGTCAAAC GAGCAGGGGA TGCAGACTTT CGATCAAGCG
TTACTCAAAC TCTATAGTGA AGGGGAGATA AGTTACGCCG ATGCGCTTCA TTACGCCGAT
TCACCTAATG ATCTTCGCTT GATGATTAAA CTTCAAGGCT CTGACCCCTC CAGTTCAGGT
TTCATGGAAG GGGTTACACT GGATATGGAT TAA
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| Protein sequence | MDVRPFLKIM VERKASDLFI TAGFPPSAKI DGELRPLSES SFTPAQALDF VESLMTDVQK
TEFHESRECN FAFAAKELGR FRVSAFWQRE APGCVMRRIE TKIPEVEDLK LPPILKDLVM
SKRGLIIMVG GTGTGKSTSL AALVGYRNAN SRGHILTIED PVEFVHEHRK SIITQREVGI
DTESFDAALK SSLRQAPDVI LIGEIRSQET MEFALSFAET GHLCMATLHA NNANQALDRI
MHLVPESKHQ QLLFDLSLNL RGIVAQQLVP KADGTGRRAA IEILINTPRI SSLIAKNELH
SLKETMAKSN EQGMQTFDQA LLKLYSEGEI SYADALHYAD SPNDLRLMIK LQGSDPSSSG
FMEGVTLDMD
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