| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1232 |
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| Symbol | |
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| ID | 5614159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1465609 |
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| End bp | 1466313 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932085 |
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| Product | alanine racemase domain-containing protein |
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| Protein accession | YP_001472971 |
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| Protein GI | 157374371 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
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| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000871207 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.432188 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAACAA TAGCAGACAG GCTGGCTAAC GCCCAGCATC GAATTACCCA AGCGGCAAAG
TTTTCATCTA GAAATGCCGA TGAAATTCAA TTACTCGCAG TGAGTAAAAC TAAACCTATT
ACAGATATTA TAGCGGCCTA TGCTGCTGGT CAGAGACTTT TCGGAGAAAA CTATGTCCAG
GAGGGGGAGT CTAAGGTAAA CGAGCTGAAA TCTATCTGTC CTGAAATCCA ATGGCACTTC
ATCGGTCCCC TGCAATCCAA TAAGACAAAG GTCGTCGCCG GCCTTTTCGA TTGGATGCAT
ACCCTTTGTC GGGATAAAAT TGCTGTGCGT CTCAATGACC AACGTCCCGA TGCGCTAAAA
CCACTCAATA TCTGTATTCA GGTTAATATT AGTGGTGAGG CGAGTAAGTC AGGAATCGTC
CCTTCTGAGC TTATGGTGCT GGCCAACACT ATCGATACCC TTCCAAAGTT GACGCTGCGT
GGATTGATGG CGATTCCAAC GGCAACAGAT GATAAACGCA AGCAAAAAGA TGAGTTCCAA
CAACTGCAGA GTTTATTCCT GAAATTAAAA GCCATCTACC CAGACCTTGA TACGCTCTCT
ATGGGGATGA GTAACGATTT GGAACAAGCC GTAGAGCATG GCTCAACCAT GGTTAGAATT
GGTAGTGCGA TATTTGGTGA AAGAGAGAAG GGGTTGAATG CTTGA
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| Protein sequence | MTTIADRLAN AQHRITQAAK FSSRNADEIQ LLAVSKTKPI TDIIAAYAAG QRLFGENYVQ
EGESKVNELK SICPEIQWHF IGPLQSNKTK VVAGLFDWMH TLCRDKIAVR LNDQRPDALK
PLNICIQVNI SGEASKSGIV PSELMVLANT IDTLPKLTLR GLMAIPTATD DKRKQKDEFQ
QLQSLFLKLK AIYPDLDTLS MGMSNDLEQA VEHGSTMVRI GSAIFGEREK GLNA
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