Gene Ssed_1230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1230 
Symbol 
ID5614170 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1464064 
End bp1464612 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content44% 
IMG OID640932083 
Productprotein of unknown function YGGT 
Protein accessionYP_001472969 
Protein GI157374369 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000825612 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.409234 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCAT TAAGTTTTTT AATCAGTACC GTTTTTGATC TTTACCTGAT GATTGTGATT 
CTCCGAATTT GGCTTCAGCT CGCTAAGGCC GATTTTTACA ACCCATTCAG TCAGTTTATT
GTAAAAGCTA CCCATCCGAT TGTCGCCCCT TTGCGCCGTG TTCTCCCCTC CATTGGTGGG
TTTGATACGG CATCGGTATT ACTCGCGCTT ATGGTCGTCG TGGCTAAATT TGTGATCCTT
AGCCTCATAG CCGGCGCAGC CATCGATATT CTAACAATTT TGTTAGTTGC CGTAGTCTCT
GTCTTTAAAG AGGCTGGAGT ACTGCTTTTC TGGATGCTGA TCATTCGAGC CATTTTAAGC
TGGGTCAGCC AAGGTCATAA TCCTATTGAG ATGGTCATGG GACAGTTAAC CGAACCTTTC
CTTTCACCAA TCCGTCGCAT TCTTCCTCCT ATGGGCGGCC TCGATCTTTC ATTGCTTGTA
ATGATGATCA TCCTTAACTT CGTCAATATT TTGTTAGCGC AATATGTGCC TTTCTGGGCA
AACGTATAG
 
Protein sequence
MNALSFLIST VFDLYLMIVI LRIWLQLAKA DFYNPFSQFI VKATHPIVAP LRRVLPSIGG 
FDTASVLLAL MVVVAKFVIL SLIAGAAIDI LTILLVAVVS VFKEAGVLLF WMLIIRAILS
WVSQGHNPIE MVMGQLTEPF LSPIRRILPP MGGLDLSLLV MMIILNFVNI LLAQYVPFWA
NV