| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1227 |
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| Symbol | |
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| ID | 5614199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1462438 |
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| End bp | 1463040 |
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| Gene Length | 603 bp |
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| Protein Length | 200 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932080 |
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| Product | putative deoxyribonucleotide triphosphate pyrophosphatase |
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| Protein accession | YP_001472966 |
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| Protein GI | 157374366 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0127] Xanthosine triphosphate pyrophosphatase |
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| TIGRFAM ID | [TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000551946 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.198149 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAAAT TTGTCCTCGC CAGCGGCAAC AAAGGCAAAC TTAAAGAATT TTCAGAAATA
TTTGCTCAGT ATGGTGTACA GGTTCTTCCT CAAAGCCAGT TTAATGTCGA AGAGGTCCCG
GAGACAGGCA CTACTTTCGT CGAAAATGCC ATTATTAAGG CCCGTCATGC CGCAGAAGTA
ACCGGGCTTG CGGCAATTGC CGATGACTCT GGACTCGAAG TTGACCTGCT AGATGGGCAA
CCCGGGATAT ATTCGGCCCG ATATGCCGGA GAAGAAGCCA GTGCAACCGA TAACTATGAA
AAATTGTTGG AAGCCCTGAA AGAGACTAAG GAAGGCAGAA CGGCGAGATT TCAATGCATC
CTTGTCTACA TGCGCCACGC AAAAGACCCG ACTCCCATCA TCTGCCAAGC TTCCTGGGAA
GGTAGGATAG GCTTCGAAGT CAAAGGTGTA AATGGCCATG GCTACGATCC GATATTTATT
CCCAATGAGC ACCAGTGCAC AGCAGCTGAG CTTTCCAGTG ATGAGAAAAA CCGCCTCAGC
CACCGCGGAA AAGCGATGTC ACAGTTAATC GATGCAATGC AAAAGCAAGG TATACTCATT
TAA
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| Protein sequence | MDKFVLASGN KGKLKEFSEI FAQYGVQVLP QSQFNVEEVP ETGTTFVENA IIKARHAAEV
TGLAAIADDS GLEVDLLDGQ PGIYSARYAG EEASATDNYE KLLEALKETK EGRTARFQCI
LVYMRHAKDP TPIICQASWE GRIGFEVKGV NGHGYDPIFI PNEHQCTAAE LSSDEKNRLS
HRGKAMSQLI DAMQKQGILI
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