| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1220 |
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| Symbol | trmB |
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| ID | 5614134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1454173 |
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| End bp | 1454889 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640932073 |
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| Product | tRNA (guanine-N(7)-)-methyltransferase |
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| Protein accession | YP_001472959 |
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| Protein GI | 157374359 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0220] Predicted S-adenosylmethionine-dependent methyltransferase |
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| TIGRFAM ID | [TIGR00091] tRNA (guanine-N(7)-)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000013255 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.296517 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGACG TGACAACAGC GGAGTTTAAT GAAGAAGGTA AGTACCTTCG CAAAGTAAGA
AGCTTTGTAT TAAGAGAAGG TCGATTAACT AAAGGCCAAG CCGCCGCTAT GGAGCAACAT
TGGCCTGCGA TGGGTCTTGA TTACTCTCCT GAGCCATTAG ATTTGAAAGA AGTTTTTGGT
AGAGATGCCG ATACTGTGCT AGAGATTGGC TTCGGTATGG GAGCTTCTCT TGTTGAAATG
GCTAAAGCCT CTCCTGAACT TAACTTTATC GGTATTGAAG TTCACAAACC TGGCGTGGGA
GCTTGTCTCA GCGTTGCCGG AGAAGCCGGA GTGACTAACT TACGTGTCTT CCATCATGAC
GCTATCGAGG TGCTTGAAAA TAGCATTGTG AAAGGATCGC TTGCTCGAGT GCAGCTTTTC
TTCCCTGATC CTTGGCATAA GAAGCGCCAC CATAAGCGCC GTATTGTTCA GTCTGAATTT
GCACAGTTAA TTCGCAACAC CCTAAAAATC GGTGGTGTTT TCCATCTTGC TACTGACTGG
GAAAATTATA GCGAGCATAT GCTGGAAGTC ATGGGAGCAG CTGAAGGCTA TAAGAACCAG
TCGCTGACAG GAGATGTTGT TGAGCGTCCG GACCATAGAC CACTCACTAA GTTTGAGGCC
AGAGGTCACA GACTCGGTCA TGGTGTATGG GACATAATGT TTGAGCGTAT CGACTGA
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| Protein sequence | MSDVTTAEFN EEGKYLRKVR SFVLREGRLT KGQAAAMEQH WPAMGLDYSP EPLDLKEVFG
RDADTVLEIG FGMGASLVEM AKASPELNFI GIEVHKPGVG ACLSVAGEAG VTNLRVFHHD
AIEVLENSIV KGSLARVQLF FPDPWHKKRH HKRRIVQSEF AQLIRNTLKI GGVFHLATDW
ENYSEHMLEV MGAAEGYKNQ SLTGDVVERP DHRPLTKFEA RGHRLGHGVW DIMFERID
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