| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1219 |
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| Symbol | |
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| ID | 5613948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1452845 |
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| End bp | 1453957 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932072 |
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| Product | A/G-specific adenine glycosylase |
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| Protein accession | YP_001472958 |
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| Protein GI | 157374358 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1194] A/G-specific DNA glycosylase |
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| TIGRFAM ID | [TIGR01084] A/G-specific adenine glycosylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000411331 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.458065 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGACAA ATTTAAATGT TCCTAATATG CCGCCAAATA ACTCCACACC TTCCAGCAGC
AGATCTTTCT CTACCCGCAT CGTCGACTGG TACGATAAAT TTGGCCGTAA ACACCTGCCC
TGGCAGATAG ATAAGACCCC CTATAAGGTA TGGGTATCGG AGATCATGCT GCAACAAACC
CAAGTTAGCA CTGTGATCCC TTACTATCTG AAGTTTATGG AACGTTTTCC GGACATACAA
TCACTCGCGG ATGCACCGCA GGATGAGGTA CTTCACCACT GGACCGGGCT CGGTTATTAC
GCTCGCGCAC GAAATCTGCA TAAGTCTGCT CAAATGATCC GCGATGAACA CGCCGGTAGT
TTTCCAACCC ACTTTGAACA GGTGCTGGCG CTTCCCGGCA TAGGTCGCTC GACTGCCGGA
GCGGTATTAT CACTCTCATT GGCACAGCAT CATCCGATAC TCGACGGTAA CGTAAAACGC
GTGCTAGCCC GTCACGGCGC TATCGAAGGT TGGCCGGGAA AAAAGACTGT CGAAAACAGA
CTCTGGGAGT TAACCGACAA ATTAACTCCG CAACAAGATG TACAGAAATA TAATCAGGCC
ATGATGGATA TTGGCGCTTC GGTTTGCTCT CGTTCTAAAC CTGCTTGTTC TGAATGCCCG
GTAGCAATCG ATTGTCAGGC TCAATTATCA GGCAGACAGA CCGAATATCC GGGTAAAAAG
CCTAAGAAAA TGACACCTGA AAGAAATGCC TTCATGTTGG TCTTATCAAA AGGGGGTGAC
ACCCTGCTAG AGAAACGTCC TCCTGCGGGG ATATGGGGAG GATTATGGTG CTTCCCCGAG
TTCTCGAGCC GCCAAGAATT AGAGGTATAT CTGGTCGAAA ATGGGTTAGA CTCAGCTGAA
ATGGAAGACT TACCAGGCTT TAGGCATACT TTCAGCCACT TTCATCTGGA TATCACCCCA
ATTTATATTC ATGTCGACGA CTGGAGAGAT AACCTGATCA TGGAAGATAA GCCTTCACTC
TGGTATAACT TACCCAATCC CCCTAAAGTT GGTTTAGCTG CTGCAACAGA GCGAATTCTG
GCCAGCTTAG GTTCTGTATT AATTAAGGAG TAA
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| Protein sequence | MMTNLNVPNM PPNNSTPSSS RSFSTRIVDW YDKFGRKHLP WQIDKTPYKV WVSEIMLQQT
QVSTVIPYYL KFMERFPDIQ SLADAPQDEV LHHWTGLGYY ARARNLHKSA QMIRDEHAGS
FPTHFEQVLA LPGIGRSTAG AVLSLSLAQH HPILDGNVKR VLARHGAIEG WPGKKTVENR
LWELTDKLTP QQDVQKYNQA MMDIGASVCS RSKPACSECP VAIDCQAQLS GRQTEYPGKK
PKKMTPERNA FMLVLSKGGD TLLEKRPPAG IWGGLWCFPE FSSRQELEVY LVENGLDSAE
MEDLPGFRHT FSHFHLDITP IYIHVDDWRD NLIMEDKPSL WYNLPNPPKV GLAAATERIL
ASLGSVLIKE
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