Gene Ssed_1215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1215 
Symbol 
ID5611311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1448119 
End bp1449423 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content46% 
IMG OID640932064 
Productglucose/galactose transporter 
Protein accessionYP_001472954 
Protein GI157374354 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0738] Fucose permease 
TIGRFAM ID[TIGR01272] glucose/galactose transporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000975208 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.526597 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATGA CATTAAATAG TGATAAGAAG CGCAGTAGCG TTATCCCGAT GACGATAGTC 
GCAGTGCTCT TTTTTGTGCT GGGGTTTGCA ACCTGGCTCA ATGGCTCATT GATGCCGTAT
CTGAAACAGA TCCTTCAATT AACTCCGCTA CAAGCCTCAC TAATTTTATT TTCATTTTAT
ATTGCAGTGA CCTTTACCGC GCTACCTTCA GCCTGGTTAA TACGAAAGGT GGGTTATAAA
AACGGCATGG CGCTGGGTAT GGGTGTCATG ATGATTGCGG GTTTACTCTT CATTCCCGCC
GCTAAGACTC AGATTTTCGG TTTGTTCCTT TTCGCACAGC TGGTGATGGG AGCGGGTCAG
ACTCTACTTC AAACTGCTGT GAATCCTTAT GTTGTCCGCA TTGGCCCTGA AGAGTCTGCC
GCCGCACGTG TTAGTGTGAT GGGGATTTTG AATAAAGGTG CCGGTGTTAT AGCACCTATG
GTATTTACCG CTCTTATCTT AGACAGTTTT AAAGATAGAG TGGGGACAGA GCTGACTCAG
CTTCAGATAG ATGAGATGGC TAATGGCCTG GTGATCCCAT ACCTGGGAAT GGCACTGTTT
ATCGGTTTAT TAGCATTAGT CGTCAAGAAA TCACCTCTGC CGGAATTGGC AAATGAAGAT
GCTGACAGCG ATGCAAACAG TAAAGGCCAT ATAAAGGAAG CTTTATCTCA TCCTAATCTG
GCATTCGGTG TGGCGGCGCT GTTTTTCTAC GTTGCTGTCG AGGTGATAGC GGGTGATACG
ATAGGTACAT TTGCCCTCTC TTTAGGTGTT GAAAGTTATG GTGTGATGAC CTCATACACC
ATGATCTGTA TGGTGCTTGG TTATACATTA GGGATATTGA CCATTCCTCG TTTTATCTCT
CAGCCAAAAG CCTTGATGAT CTCGGCGATA TTGGGATTAC TGTTAACTTT AGGTATCGTA
TTTGGTGATA ATGAATCCTA TGCCATTGCA AACGTCCTCT TAGTTCCATT TGGTGGCGCA
CAGCTACCTG ATACCCTGCT AATGATCGCT TTCCTTGGCT TGGCTAACGC GATTGTTTGG
CCGGCGGTAT GGCCACTGGC GCTATCGGGC ATGGGTAAGT TAACCAGCAC CGGTTCTGCA
TTACTGGTAA TGGGGATTGC TGGTGGAGCC TTTGGTCCGC TATTTTGGGG ACTGACAAGC
TCTGTCTCAT CTCTGGGACA GCAGGGCGGC TACATGGTGA TGTTACCCTG TTACCTGTTT
ATCCTATTTT ATGCCGTCAA AGGCTATAAG ATGAAAAGCT GGTAG
 
Protein sequence
MEMTLNSDKK RSSVIPMTIV AVLFFVLGFA TWLNGSLMPY LKQILQLTPL QASLILFSFY 
IAVTFTALPS AWLIRKVGYK NGMALGMGVM MIAGLLFIPA AKTQIFGLFL FAQLVMGAGQ
TLLQTAVNPY VVRIGPEESA AARVSVMGIL NKGAGVIAPM VFTALILDSF KDRVGTELTQ
LQIDEMANGL VIPYLGMALF IGLLALVVKK SPLPELANED ADSDANSKGH IKEALSHPNL
AFGVAALFFY VAVEVIAGDT IGTFALSLGV ESYGVMTSYT MICMVLGYTL GILTIPRFIS
QPKALMISAI LGLLLTLGIV FGDNESYAIA NVLLVPFGGA QLPDTLLMIA FLGLANAIVW
PAVWPLALSG MGKLTSTGSA LLVMGIAGGA FGPLFWGLTS SVSSLGQQGG YMVMLPCYLF
ILFYAVKGYK MKSW