| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1208 |
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| Symbol | |
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| ID | 5613568 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1435747 |
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| End bp | 1438359 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932057 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001472947 |
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| Protein GI | 157374347 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.888079 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGACCAT CTAATTTTAA GAAAACTGTA CTAGCTACAA ATATCGCCCT ACTGCTTGGT
ACTGCAATGT CGATGTCAGT TGTTGCTGCC GAAGCAGAAT CTGCAGGTTC TGCAGCAGAC
GATGAAAATA TTGAGAAAAT TGAAGTGCGT GGTATGCGCG CTTCTATGAA GGCTTCTGTA
AATGCTAAAA GATTCTCTAA CTCAGTTGTC GACGCTGTTA CCGCAGAAGA CATAGGTAAA
TTTCCTGACG GCGATGTAGG TGAGTCACTG GGTCGTATTC CTGGTGTTGC CGTAAACCGT
CAGTTTGGCC AAGGTCAGCA GGTTTCAATT CGTGGTGCAT CGAGTAGCCT TACCAGAACC
TTACTTAATG GTCACTCGGT AGCCTCAACG GGTTGGTATG ATCAGCAAGC AATTGACCGA
AGCTTTAACT ACAGTTTACT GCCACCTGAA ATGGTAGGTG CAATCGAAGT GTATAAATCA
TCACAAGCTG ATATTGCTGA AGGTGGTATA GGTGGTACGG TTATTGTTAA GACCCGTAAA
CCACTTGATT TAGATGCCAA CTCTGTCTTC CTGAGTGCTA AGGGAGATTA TGGTACAATT
TCTGAAGAGA TCGATCCTGA ACTTTCTGGT CTATATAGCT GGAAAAATGA GAATGAAAGT
TTCGGTTTCC TACTCTCTGC AGCAAGTTCT GAAACCAATT ACCAGCGTAA TGGTGTTGAG
TCTCTATTAG GTTGGGGCGA TATAGTTCCA ACCACATTTG AACAAGAGCG AGAGCGTACT
GCAATCAATG GTGCATTCCA GTACCGTCCT ACAGATAGTT TAGAGTTTGG TTTAAATATC
ATGAGCCTTG ATATGAAAGC CAACAATGCT AACACCTCAC TATTTGTGAT GTTCCCGGAT
GACAAAGAAG CGGCATGTGA ACAAACCAAT GCTTCAGGGA CTTGTACCTT CTATCGTCGC
GATGGCAATG GTGCTAACCC CGGCTGGGCT CAAACTTGGG CTCGTAAAGC GAGTATGGAT
TCAAATACAT ACGATCTAGA TTTTAAATAT GAAGCCGATA GTTACACTTT AGAGGGTCGA
GTAGGTAACA CCAAATCTGA AGGTGGTACA GACATGACCG CTAACTATGG TTTTTGGCTA
GGTCAGCCTG GAGATTATGC GGGGACGTAT GATGCTACCG GCGAAGTGAT AGATATCGAT
ATTGCTAACA AATCATTTAC TGCAGAAGAC TTCAATGGTC AACTAGCTCC TGCTGGCTGG
TCTCTTAAGA AGCAGCCTAA CTCTGATGAA GAGACCTATG CGCAATTTGA TATTACTGTA
CCGGTAGAAC TTGGTGCTAT TACATCATTT AAGACTGGTG TTCGTTGGGC CGAACACGAC
GTATCTCAGG AAACATTCCC TGCGATTGTA AACGCAGATG TTACAGCTAA AGATGCATCT
GAGTACTACT CTGGTACTGT TTCTTCTGGT GCTGGTTTCA CTTTGCCTAA GCCAAACTTA
GATGCGATGC TTGCCGATGC TAATGCTGCT ATCGGTGGAT TTAGTAAAGA AGGTCCGGTA
TACAAATCAG GTTACGGTAC CATTAACGAA GAGAATCTGG CGTTGTATTT GATGGCCAAT
TTCGAGTCTG ATGGTATTCG CGGTAACTTC GGTTTGCGTT ATATCTCAAC AGATGCGTCA
TCTGATTACT ATCAGCTCCA GTCAGATGGG TCATATGCAG ACAACTTAAG TACAATGAAG
TCAAGCTACA GTGACGTACT CCCAAGTGTG AATATTGCAT TTGATGTGAC GAGTGATGTA
ATTATTCGTA CCTCGGCTTC ACAAGTTATC TCTCGTCCTA ACTACGGTGA TATGTTCGCA
TCTTCAGCTT TAGCCGGTTA CGCTGATGGC ACTGCAGGCA ATGAAGTTGT TAATACTGGT
AATATTGCGC TTGAGCCATT TAAAGCAACC CAGGCAGATC TTGGTGTTGA ATGGTACTTT
AGCCCGGACG GTATCGTAGC TGCGACTTAC TTTATTAAAG ATATCAGTTC ATTCGTGACT
TCTGATCAAA TTCTTGATCA AAGTATCGGT ATTATTGACC CAGATTCAGG TGAAGATAAC
TGGACTAAGT CGACCAAGAA AAATGGCACA GGTGGGCAAA TTCAGGGTAT TGAACTTCAG
CTTCAAGACT CATTTGAAAA TGGCCTAGGT TACTCTGCTA ACTATACCTT TGCAGACTCA
GATGCTCCTG CGGATAATTA TCCGGATGAA GTAAGTGTTT TCTCTGACTC ATCTAAGCAC
ACTGTTAACT TAGTGGGTTA CTATGAGATG GAAGACTTCT CTGCACGTGT AGCCTATAAC
TGGCGCAGTG AGTATATGAT CCGTGAGCTA CCCGGTTTCT ACGGTAACCG TGAACACCAG
GACTACGGTA CCGTTGATTT GAGTGCAAAT TACAACATTA CTGATTACCT ATCTGTTACT
TTCGAAGTTG TTAACTTGCT TGAAGAAGAC AGTGTGCAAC TTGGTGTTGC GCCAGACTCA
GCTGAAGTAA AGCCTGAGCT TAAAAATGGT TACCCAGCAT GGAGCTTTGA AGGTGAGGCT
CGTTACAAGC TAGGTGTAGC ACTACGTTTC TAA
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| Protein sequence | MRPSNFKKTV LATNIALLLG TAMSMSVVAA EAESAGSAAD DENIEKIEVR GMRASMKASV
NAKRFSNSVV DAVTAEDIGK FPDGDVGESL GRIPGVAVNR QFGQGQQVSI RGASSSLTRT
LLNGHSVAST GWYDQQAIDR SFNYSLLPPE MVGAIEVYKS SQADIAEGGI GGTVIVKTRK
PLDLDANSVF LSAKGDYGTI SEEIDPELSG LYSWKNENES FGFLLSAASS ETNYQRNGVE
SLLGWGDIVP TTFEQERERT AINGAFQYRP TDSLEFGLNI MSLDMKANNA NTSLFVMFPD
DKEAACEQTN ASGTCTFYRR DGNGANPGWA QTWARKASMD SNTYDLDFKY EADSYTLEGR
VGNTKSEGGT DMTANYGFWL GQPGDYAGTY DATGEVIDID IANKSFTAED FNGQLAPAGW
SLKKQPNSDE ETYAQFDITV PVELGAITSF KTGVRWAEHD VSQETFPAIV NADVTAKDAS
EYYSGTVSSG AGFTLPKPNL DAMLADANAA IGGFSKEGPV YKSGYGTINE ENLALYLMAN
FESDGIRGNF GLRYISTDAS SDYYQLQSDG SYADNLSTMK SSYSDVLPSV NIAFDVTSDV
IIRTSASQVI SRPNYGDMFA SSALAGYADG TAGNEVVNTG NIALEPFKAT QADLGVEWYF
SPDGIVAATY FIKDISSFVT SDQILDQSIG IIDPDSGEDN WTKSTKKNGT GGQIQGIELQ
LQDSFENGLG YSANYTFADS DAPADNYPDE VSVFSDSSKH TVNLVGYYEM EDFSARVAYN
WRSEYMIREL PGFYGNREHQ DYGTVDLSAN YNITDYLSVT FEVVNLLEED SVQLGVAPDS
AEVKPELKNG YPAWSFEGEA RYKLGVALRF
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