| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1205 |
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| Symbol | |
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| ID | 5611621 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1433115 |
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| End bp | 1433624 |
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| Gene Length | 510 bp |
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| Protein Length | 169 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932054 |
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| Product | type IV pilus biogenesis protein, putative |
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| Protein accession | YP_001472944 |
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| Protein GI | 157374344 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACT GTGCCGGATT TACATTGATA GAGTTAATGA CAACACTCGT GGTATCAACA
ACACTTATCA GCATGGCAAT ACCATCACTA GCATCTCTAT ATCAGGCCTA CCGCGCAGAT
AGTGCCATAC GAACAATACG AAGCACATTA CAACTAGCCA GAAACAGCGC TATTAGTTAT
GGTTCTAGAG TTACAGCTTG CCCATTGCAG GAGGGAATCT GTACACAAGA CTGGAGAATA
GGGATCACAA TATTTATCGA TAGAGGAGAT CCCAATACTA TAGATGGCTC AGATCAAGTT
TTACTGACAA CAGACCACTT CCATCAAGGT GACTTTGTCA CTTACAATCG CTCAGCAGTT
CGATTTCAAC CCGATGGATT AGCTTCCGGT ACCAACGGAA CACTTCGCTA TTGTCCAAGC
TCTGTATCTA GCGAGCATTC AAAGGCGGTA ATAATTAATC AAGCCGGTAG AATACGCTTT
TCTAAAGACA GTAATATCCG ATGTAATTAA
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| Protein sequence | MKNCAGFTLI ELMTTLVVST TLISMAIPSL ASLYQAYRAD SAIRTIRSTL QLARNSAISY
GSRVTACPLQ EGICTQDWRI GITIFIDRGD PNTIDGSDQV LLTTDHFHQG DFVTYNRSAV
RFQPDGLASG TNGTLRYCPS SVSSEHSKAV IINQAGRIRF SKDSNIRCN
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