| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1204 |
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| Symbol | |
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| ID | 5611620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1432491 |
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| End bp | 1432979 |
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| Gene Length | 489 bp |
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| Protein Length | 162 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640932053 |
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| Product | methylation site containing protein |
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| Protein accession | YP_001472943 |
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| Protein GI | 157374343 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCGAT TATCAAAAGG TTTCACACTC ATTGAAGTAA TGGTGACAAT GGCTGTAGCG
GCTATTTTAC TTGGTATAGG TGTACCATCT TTAGTTTCAG TGTATGAAAG TGTACGAGTT
AATAATAATA TCGAAAAAAT CAACAATATT TTTCTTTTCG CAAGAAACCA AGCTATTAGT
TACGGTACAA CGGTAAACGT CTGCGCATTC GCTTCAACTA CGTCCTGTGG TACCAACTGG
GGAAATGGAA TAAGGGTATA TATAACGAGA GCCGATAGCA GTGAAAAAGA GCTACGTGTA
ATTGATAACT TTAACCCCAA TGATAAACTG ACAGGCTCAA GCTCCACCTT CACTTTCTCC
CCCGAAGGCC TATCAAGTGG TGCAACCATA ATTTACTGTC CAGGAGGGAA AAATAGCCAA
TCAAAAAGTA TTTCAGTTAG CAGTAGCGGA TTAATATCGT ACGGTGTAGA CGGAAAGAGC
TGCGCGTGA
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| Protein sequence | MRRLSKGFTL IEVMVTMAVA AILLGIGVPS LVSVYESVRV NNNIEKINNI FLFARNQAIS
YGTTVNVCAF ASTTSCGTNW GNGIRVYITR ADSSEKELRV IDNFNPNDKL TGSSSTFTFS
PEGLSSGATI IYCPGGKNSQ SKSISVSSSG LISYGVDGKS CA
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