| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1201 |
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| Symbol | |
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| ID | 5612630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1427962 |
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| End bp | 1431537 |
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| Gene Length | 3576 bp |
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| Protein Length | 1191 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932050 |
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| Product | type IV pilin biogenesis protein, putative |
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| Protein accession | YP_001472940 |
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| Protein GI | 157374340 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.113052 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTATA AGAATTGTTT ATGTGGTGTG TTTACCGTTT TAGTGATTTT GTCGTCAGGC
ACTTTTGCAG ACGATACAGA ACTCTATCTG ATTGACTCTT CAGTTAATAC CGGTAAACGT
CCGCAGGTGT TATTTGTTTT TGATAACTCC GGGAGTATGT CGACGGAGGA TCAAAATGCG
GTGAGCTCTT ACTGTTCTGC AGCCGATAAA GCCAGTGGAG GATGCAATTA TGCAGAAGGT
TTTGGTACCT ATTTAGAGGG GTACCACGGC TATATAAACG ATAAGGGGAT CTATTGGAAT
GCCGGTGGAA TCGATAATAC CGCTAGTATG CCTGTACCGG AGGACCCCAA CGAAAGTCGT
CGTTTTGAGG TGTCGAATAA TAACTGTAAT AGTGCAGTTA CAGCATTAAA TGAGCGTGGT
AGATATACAG GTTATATTAG AGAATTTAAG TCCAGCGGCA AGAGCGGGGA GTGGTTCTCA
CTGGCTGAGA ATAACGGTCT CAATAAGGCT GCCTTGGTTG ACTGCCATGA AGATATTCTA
AAACCTGATC CTGCAAACCC AGGGAGTATC ATTAAGGGGA AGAATGTAAC GACGTTCGAT
GATGGTTACC CTATAAATGA CAAAAATATG TATACCTCCG GAGCCACGGA CGTCGATCGT
TTGTTTAGCG AGGCTAATAC AGATTTTGGT AAAGGCTCAC CTGTTACGCT ATATACGCCG
CATTATTTAG TTTGGTATCA GTGGGTAACA AAAACTGAAG AGGGGCAAAA TAGTGGTGGC
ACGGGGACAA GACTGGAAGT TGCAAAGGAT GCGTTGAAGA CAGCTTTGAC CGGTTTATCT
ATCCCTATAG ATGCGGGTTT GGCTGTGTTT AATCTGAATT ACCCACAAGA GTATGAAATT
GATGGTGGAA GGATCGTTTC TGCTATTAAA GAGATGACGC CGACCAATGA AAGTACTCTC
ATCTCCCTGA TAAACGGTAT GCCGGCACAA ACCAATACAC CGTTATGTGA AACCTTATAT
GAAGCCCATC AATACTTTAG TGGTGGGGCT GTGACCTTCG GTAATAAAGA CCGTAATGGG
CAAGGTTATT ATAAAATTGA TGGTTATGTA CCAAATAACC CGCCAAGTAT TATCAGTTCG
GGGAGTTATA CAACACCTTT TAAAAAGTGC CCCGATACCG CCTATATCAT CTATATTACA
GACGGTGCCC CAACGTTAGA CCGGGCGGCG GATGGTGCTA TAGCTGGCTT AACGGCTTCA
GCTGCCAATG CTGCCAACTA TGCGCCTTTT ACCTTTACGA ATACGCGAGG TGATGAAGAG
ACAAGTTATA TGCCCGCTCT GGCAGCATAT ATGTATAACA ATGATTTGGT TAAAGGTGTG
AAAGATGCGA GTGGTGTAGA TAATCAGCAA AACGTAAGAT TATTTACCAT CGGCTTTTCT
GATGGTGCAG ATGCGGCGGC GGATCTGCTT GAGGAAGCGG CATTCAGAGG CGGAAACCCC
AGAGTAAATG GAGTATCGAA GGGCTATTAC GTTGCTAAAA ATGGTCTGGA CTTAGTCACT
GCGATGGATG ATGCTCTGAA GTCTATTCTG TCTATTGACT CATCTTTTAC ATCGCCCAGT
ATCGCCAGTA ACAACTTTGA TAAAACCCAA ACCTACAACT CAGCCTATTT TGCGATGTTC
CTGCCCGGAA AAGGTCCTCG CTGGAGTGGA AACCTTAAAA AGCTAAAGGT TAATGGTTCG
GGGGATATTG TCGGCCCCGG TGGTACGGCT AATGCGATCG ATTCGAATGG TAATATTGCT
TCGACCACCT GTACTTTTTG GAATACCTGT TCGGGGGCAA ACAATGATGG TAATAAAGTC
ACTGCCGGCG GTGTATTACC CGCATTGAGA ACGGCACTTA AAAATAGAAA AATATTAACT
AATAGCGGTA ACAGCTTAAT CGATATTGAT AACTTATCGA CATCGACTAT GTATTCACTG
CTTGGTAGCC CTATTGCGGA CTCTCAATCG ACAGCCGTTC GAGAGCATCT AGACTGGCTC
TATGGTGTGG ATGTCGATGA TGATGATAAT AATGGAAGCT TTTCCGATAC CAGAGAGGAT
GTGATGGGAG ACCCTCTGCA CTCTAAACCT TTGGCAATCA ACTTTGGCCC CTCAACTTCA
AGCTTGGATG TTCGGATCCT TGTTGGTACC AACCAGGGAT TAGTCCATAT GTTTAAAGAC
TCAGATAAAG GAAGTGCAGA TTACTCTGTT GGAGTTGTTA CAGAGTCTTG GGCATTTGCT
CCTGCTGAAC TGCTAAGTAA TATTCCGGAG TTAAGAGAAA ACCTGCCAAC AGGTGAACAC
AGTGTCTATG GCATGGACTT ATCACCCGTT GCGTACACAG AAACGGATTC TAGTGGCAAA
GTCAATAAAG CGTGGGTCTA TTTGGGGATG CGCAGAGGTG GTGTTTCCTA TTATGCGTTA
AACATTACCA ATCCTGATAG CCCCGCATTT AAGTGGAAGA TAGACTCAAA TACGAGTGGA
TTAGAGGAGC TTGGGCAAAC CTGGTCAGAG CCTGTGGTTA CATCTATATC TGGAGTAGAG
GGGCCGGTGC TCATATTTGG TGGCGGTATG GCTTCATCTG ATGGAGCTGG AGAAGCTGTG
TATATTGTCA ATGCTGATAC TGGTGAATTT ATCCATAAGT TTACAGCTGC AGGTATGTAT
AGTGTTCCGA ACAAGGTGGC AGTGTTAGAC AGTAATAATG ATGGTATAAC TGACAGAGTA
TATGCAACAG ACATCGGCGG TAATGTTTGG CGCATGGATC TACCTTCAGC CGATAAAACT
AGTTGGTCAA TTTTTAAATT TGCAGCTATT GGTTCGGGAA CGGCGCCCGA TGATAGGATG
TTTTTTGCAG AGCCCACAGT GGCGCAGACT CAAATCAATA ATATTCATAG TGAGAGTGGA
GTGTTGTCTT ACCAAAACCT TCCTTATGAT GCGGTTACGG TTGGTACGGG AAATCGTACT
CACCCGTTAG ATACAGTAAC AAACGATATG TTTTATGTAT TTCAAGATAG GGATGTGGTG
ACCAAGACAT TTTCTAGTGA CGATATTCCA GCACCTTTGA CACTTACAGA CCTATATAAT
GTGTCCACAT CGGCTCCATC ATCTGAAAGT GATAATATTG CCTTCGGTAC CAAGAGAGGC
TGGTATTATA ATTTTGCAGG TTCGGGCGAA AAGAGCCTTT CTGCGTCTTT GATTTTCGAT
GGAAAAGTGT ATTTTACCTC CTTCCTGCCA CCAGTTAATA CTGAGGTTGA TCTGGATGCC
GGAATTTGTG GTTTCTCTGG TCAGGGTAGA CTTTATGTAT TTGATCTGCA TAAAGGAACG
AGGACGTCCA GTCAGCTTTA CTATGAAATT GGTGAGCGGG TTCCTGATAC TCCACAGATT
GTCATCCCTG AGCCTGAAGA GGGTGAAGAA TCTATAGCTT ACATTATAGG TGTCGGTAAA
GGGGAGTGTG TAGATGGGGA GTGTAAGGGA ACCGTAAAGT TAGGGAGTGG ACTAACGACT
AACCGAATTT ATTATCATCT GGATGAGAAA CAGTAA
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| Protein sequence | MFYKNCLCGV FTVLVILSSG TFADDTELYL IDSSVNTGKR PQVLFVFDNS GSMSTEDQNA
VSSYCSAADK ASGGCNYAEG FGTYLEGYHG YINDKGIYWN AGGIDNTASM PVPEDPNESR
RFEVSNNNCN SAVTALNERG RYTGYIREFK SSGKSGEWFS LAENNGLNKA ALVDCHEDIL
KPDPANPGSI IKGKNVTTFD DGYPINDKNM YTSGATDVDR LFSEANTDFG KGSPVTLYTP
HYLVWYQWVT KTEEGQNSGG TGTRLEVAKD ALKTALTGLS IPIDAGLAVF NLNYPQEYEI
DGGRIVSAIK EMTPTNESTL ISLINGMPAQ TNTPLCETLY EAHQYFSGGA VTFGNKDRNG
QGYYKIDGYV PNNPPSIISS GSYTTPFKKC PDTAYIIYIT DGAPTLDRAA DGAIAGLTAS
AANAANYAPF TFTNTRGDEE TSYMPALAAY MYNNDLVKGV KDASGVDNQQ NVRLFTIGFS
DGADAAADLL EEAAFRGGNP RVNGVSKGYY VAKNGLDLVT AMDDALKSIL SIDSSFTSPS
IASNNFDKTQ TYNSAYFAMF LPGKGPRWSG NLKKLKVNGS GDIVGPGGTA NAIDSNGNIA
STTCTFWNTC SGANNDGNKV TAGGVLPALR TALKNRKILT NSGNSLIDID NLSTSTMYSL
LGSPIADSQS TAVREHLDWL YGVDVDDDDN NGSFSDTRED VMGDPLHSKP LAINFGPSTS
SLDVRILVGT NQGLVHMFKD SDKGSADYSV GVVTESWAFA PAELLSNIPE LRENLPTGEH
SVYGMDLSPV AYTETDSSGK VNKAWVYLGM RRGGVSYYAL NITNPDSPAF KWKIDSNTSG
LEELGQTWSE PVVTSISGVE GPVLIFGGGM ASSDGAGEAV YIVNADTGEF IHKFTAAGMY
SVPNKVAVLD SNNDGITDRV YATDIGGNVW RMDLPSADKT SWSIFKFAAI GSGTAPDDRM
FFAEPTVAQT QINNIHSESG VLSYQNLPYD AVTVGTGNRT HPLDTVTNDM FYVFQDRDVV
TKTFSSDDIP APLTLTDLYN VSTSAPSSES DNIAFGTKRG WYYNFAGSGE KSLSASLIFD
GKVYFTSFLP PVNTEVDLDA GICGFSGQGR LYVFDLHKGT RTSSQLYYEI GERVPDTPQI
VIPEPEEGEE SIAYIIGVGK GECVDGECKG TVKLGSGLTT NRIYYHLDEK Q
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