| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1198 |
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| Symbol | |
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| ID | 5612627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1426002 |
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| End bp | 1426523 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932047 |
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| Product | type IV pilus modification protein PilV |
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| Protein accession | YP_001472937 |
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| Protein GI | 157374337 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4967] Tfp pilus assembly protein PilV |
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| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0125256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAGTG AAGAGAGAGG CTTTTCTTTA ATTGAGGTCA TGGTTGCACT TGTGATCTTA
GTTGTTGGGT TGGTTGGTGT ATTCAATCTT CATATTGTCG CTAAACGCGG TAGTTTCGAG
TCCTTTCAGC AGACTCAAGC CTCATATTAT GCCAGCGATA TAATCAATCG AATGAAACTC
AATCGAGGCC AACTTGCCAA TTATGCAGGG AACTATACTG GTGTTCCTAC AATTCCATCA
AAAGCATGTA CAGGAGCTGC TATATGTAGC CCAAGCCAAA CAGTAACATG GGACCTCTAT
GAATGGAGGG CTTCCTTTGT AGGGCAAGCC GAGAAGGTCG GAACGACAAA CGTTGGTGGA
TTGGACACTC CGACGGGGTG TGTCACTATT AATGGCAATA ATGTCACTGT GGTTATGGCT
TGGAAAGGCA TTCGTTCTAT TTCGGATGCT GGTGAAGCTG GTAGTTGTGG AAGCTCAAGT
GATAGGCGTC GACTCTTTAC ATTGCAAACA GTGATCATTT AA
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| Protein sequence | MLSEERGFSL IEVMVALVIL VVGLVGVFNL HIVAKRGSFE SFQQTQASYY ASDIINRMKL
NRGQLANYAG NYTGVPTIPS KACTGAAICS PSQTVTWDLY EWRASFVGQA EKVGTTNVGG
LDTPTGCVTI NGNNVTVVMA WKGIRSISDA GEAGSCGSSS DRRRLFTLQT VII
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