Gene Ssed_1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1196 
Symbol 
ID5613195 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1424387 
End bp1424809 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content48% 
IMG OID640932045 
Productpeptidylprolyl isomerase, FKBP-type 
Protein accessionYP_001472935 
Protein GI157374335 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00153293 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCTGATC TACGTTCTAT TTTATGTCAT ATGAATATTG TGCTTGAAGA TGGCTCTACA 
GCCGACAGCA CTAAGGCTTC CGGTAAGCCT GCTAGATTAA ATATCGGTGA CGATACCCTG
AGTCCGGCTT TTGAGTCTCA GATCGCAAAC TTGGTCGAAG GGGATAAGCA CTCTTTTACC
CTCGGCGCTG GTGATGCCTT TGGTGAGTCT AATCCTGATG CGATTCATCA TATGGGCAGA
AGTAAATTTC CGGCTGATAT GTCACTCGAG CCTGGTGTTA TCGTCAGTTT TGGCGGACCT
GGTGGAAGTG AGATCCCCGG TATCGTTCGT GAACTGGCTG GAGATTCGGT TACGGTCGAT
CTGAACCATC CTTTAGCGGG TCGGACAGTC ACATTCGAAC TTGAAGTCGT ACAGGTACTT
TAG
 
Protein sequence
MSDLRSILCH MNIVLEDGST ADSTKASGKP ARLNIGDDTL SPAFESQIAN LVEGDKHSFT 
LGAGDAFGES NPDAIHHMGR SKFPADMSLE PGVIVSFGGP GGSEIPGIVR ELAGDSVTVD
LNHPLAGRTV TFELEVVQVL