| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1195 |
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| Symbol | lspA |
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| ID | 5613194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1423851 |
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| End bp | 1424381 |
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| Gene Length | 531 bp |
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| Protein Length | 176 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640932044 |
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| Product | lipoprotein signal peptidase |
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| Protein accession | YP_001472934 |
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| Protein GI | 157374334 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0597] Lipoprotein signal peptidase |
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| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0349853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCAACTA ACTGGAAAGA CAGTGGTTTG CGTTGGTATT GGGTCGTTGT ATTGGTGTTT
ATCGCCGACC AAGTATCGAA GCAATGGGTC TTAACCAACT TTGAACTACA TGAGTCAGTG
AACTTATTAC CTTTCTTCAA TTTTACCTAT GTACGCAATT ATGGCGCAGC ATTTAGCTTT
TTAAGTGATG CCGGTGGGTG GCAAAAATGG TTATTTACCT TTATCGCCGT TGCATTTAGC
ACCATATTAA CTATCTGGCT CAGAAAACAA CCGACTAAGG TGTGGCGACT CAATTTAGCC
TATACCTTAG TGATTGGTGG AGCCTTAGGT AATCTGATCG ATCGCCTGCA GCATGGCTAT
GTTGTAGACT TCTTGGACTT TTTCTGGAAT ACGAGCCATT TTGCAGCTTT TAATATTGCA
GACTCGGCTA TCTGTATTGG TGCCGGTCTG ATCATTCTTG ACTCATTTAT CGGTGACGAT
AAAGAGAAGA GTCAGAATGG GCAAAATGAT AATAACGCAG CGAAGGAGTA A
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| Protein sequence | MPTNWKDSGL RWYWVVVLVF IADQVSKQWV LTNFELHESV NLLPFFNFTY VRNYGAAFSF
LSDAGGWQKW LFTFIAVAFS TILTIWLRKQ PTKVWRLNLA YTLVIGGALG NLIDRLQHGY
VVDFLDFFWN TSHFAAFNIA DSAICIGAGL IILDSFIGDD KEKSQNGQND NNAAKE
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