| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1193 |
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| Symbol | |
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| ID | 5613823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1419924 |
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| End bp | 1420859 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640932042 |
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| Product | riboflavin biosynthesis protein RibF |
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| Protein accession | YP_001472932 |
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| Protein GI | 157374332 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0196] FAD synthase |
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| TIGRFAM ID | [TIGR00083] riboflavin kinase/FMN adenylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000237633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAACTAA TTCGCGGTAT ACATAATATT TTACCAGCAC ATCATGGTTG CGTTCTCACT
ATAGGCAATT TTGATGGGGT CCATCGTGGA CATGCTGAAG TTATTTCGAA GCTAGTACAG
AAGGCTCGCC AATTGAAGGT TCCGGCGACA TTGATGACCT TTGAGCCTCA ACCACAAGAG
ATGTTCAGGG GCGAAAATGC ACCTGCCAGA CTGAGTATTC TCAGAGATAA GATCTTCTTA
CTCGAAGAAT TGGGTATTGA CAGGTTAGTG TGTATTAACT TTAATGCAAA GTTCGCTAGT
TTACCTGCTG AAGATTTTAT CGATAAACTA TTGGTCGAAT CTCTTGGGGT GAAGTATCTG
GTTGTCGGTG ACGATTTCTG TTTTGGTAAG CAGCGCAAGG GCAATTTTAA TATGCTCAAG
TCTGCCGGTG AACAGCACAG CTTCGCTGTG GTTAGTACCC AGAGTTTTCT TCTTGGTGAT
AAAAGAGTTA GTTCGACAGA GATCAGAGAC TTGCTTGCCA AAGGCAAGAT GGAGCAAGCC
AGACGCTTAC TCGGTCACCC ATTTACTCTT TGTGGCAAAG TAGCGCACGG TGAAAAAATT
GGACGAACTT TAGGTTTTCC AACCGCCAAT ATTGCTTTGA AACGTCAAGT TTCTCCCGTT
AGAGGAGTGT TTGCCGTTAA GTTGTATTGG GATAACAGTG ATACTTATGA AGGCGTTGCT
AATATAGGTT TCAGACCTAC AGTCAATGGC CAAGTATGCC AATTAGAAGT ACACCTTTTT
GATTTCGATG GTGACCTGTA TGGGCGCACT GTCGAAGTCG AATTGGTAGC AAAGATTCGA
GATGAGCAGC CATTCCAATC ACTGGAAGCG CTGAAGAGAC AAATTAACAA TGATGCTGAC
AAAGCCAAAG CTCTGCTTGG CTGCGATGCA GGCTAA
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| Protein sequence | MELIRGIHNI LPAHHGCVLT IGNFDGVHRG HAEVISKLVQ KARQLKVPAT LMTFEPQPQE
MFRGENAPAR LSILRDKIFL LEELGIDRLV CINFNAKFAS LPAEDFIDKL LVESLGVKYL
VVGDDFCFGK QRKGNFNMLK SAGEQHSFAV VSTQSFLLGD KRVSSTEIRD LLAKGKMEQA
RRLLGHPFTL CGKVAHGEKI GRTLGFPTAN IALKRQVSPV RGVFAVKLYW DNSDTYEGVA
NIGFRPTVNG QVCQLEVHLF DFDGDLYGRT VEVELVAKIR DEQPFQSLEA LKRQINNDAD
KAKALLGCDA G
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