| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1187 |
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| Symbol | |
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| ID | 5612692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1413288 |
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| End bp | 1414739 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932036 |
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| Product | amino acid carrier protein |
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| Protein accession | YP_001472926 |
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| Protein GI | 157374326 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1115] Na+/alanine symporter |
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| TIGRFAM ID | [TIGR00835] amino acid carrier protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAGA CTCTGATTAA CGCTATTGAG ACTGCAGTAA ATGCTATTAA CGGCTTACTG
TGGGGTAGCG TACTTATATA TGTACTGGTT GCTGCCGGTA TACTCTTTAC ACTTCGCCTT
GGGTTTATTC AGTTCCGCAT GTTTGGTCAC GGTGCCAAAT TAGTGATTAA AGGGCGCAAT
AAAACAGATG GGATCTCTTC TTTCCAGGTA TTTTGTACCT CGATGGCTGC ACGCGTCGGC
ACCGGAAATA TGGCGGGTGT TGCCGTTGCT ATTACCGTTG GTGGTGCGGG GGCTATTTTC
TGGATGTGGT TAATTGCACT TTTAGGTATG GCGACAGCAT TTGTCGAGTC GACCTTAGCC
CAGGTGTATA AAGTTAAAGA TAGTGAAGGC CAATATCGCG GTGGTCCCGC TTATTACATG
GAACGTGGTC TTGGTAAGCG CTGGATGGGA AGTATCTTCT CTATTCTACT CATCATCGCT
TTTGGTTTTG CATTCAATGC GGCGCAGGCC AATACCATGA CCGATGCGCT TAATAATGCT
TTTGGTTTTG ATAAAACCAT AGTTGGCATC GTTATTATGC TTGCCTCTGC ATACATCATT
TGTGGTGGTT TAAAGAAAGT GGCCAGAGCA TCAGAGCTGA TTGTTCCCGT TATGGCAGTG
GCATATCTTG TTATCGCCCT TGTGGTGCTA GTCATCAATA TCGATCAGGT TCCGGCGGCA
ATCTCATTAA TCGTTAAGAG TGCGTTCGGT TGGGAAGAAG CTGCCGGTGG TGCAATGGGA
GCTATGATGG CGGGTATCGC TCGCGGTCTG TTTTCAAACG AAGCCGGTAT GGGCAGTGCG
GCAAATATTG CAGCCTCTGC GACACCTAAC CCAAACCATC CTGCATCGCA GGGTTTTGTT
CAGATGATCG GTGTGTTTGT CGACACTTTG GTGATATGTA CTGCTTCTGC TGCAATTATC
TTGTTATCCG GAGTATTAAA TAATCCAGAT GGTCAGCAAG GAATTGGTCT TTTGCAATTG
GCCTTAACCA ATGAGTTGGG TAGTTGGTCG GCTTACTTTA TTGCCTTCGC GATTATCCTG
TTTTGCTTCT CTTCGATTAT TGCTAATTAT AGTTATGCCG AAAGCAATGT TATGTTCTTG
ACTAAAAGTA AGAAGGTACT GTTTATTTTC CGTGGCTTGG TACTCGCGAT GGTGATGGCG
GGTTCCGTTG CTTCATTAAG TCTGGTTTGG AATTTTGCCG ACGTGTCTAT GGGGCTTATG
GCTCTGGTTA ATATTGTCGC GATTGTCATG TTATCTAAAG TCGCTTTTGC GGTAATTAAA
GATTACGAGC GTCAGGTTAA AGCGGGCTTA ACTCCGACTT TTGACAGCAG TCAGTTCCCT
GAAATTGATG AGCTGGAGGA GGGGATTTGG GTAATGAACG AAAACAGCAC TACTGAGTCT
TCGCCAGAGT GA
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| Protein sequence | MFETLINAIE TAVNAINGLL WGSVLIYVLV AAGILFTLRL GFIQFRMFGH GAKLVIKGRN
KTDGISSFQV FCTSMAARVG TGNMAGVAVA ITVGGAGAIF WMWLIALLGM ATAFVESTLA
QVYKVKDSEG QYRGGPAYYM ERGLGKRWMG SIFSILLIIA FGFAFNAAQA NTMTDALNNA
FGFDKTIVGI VIMLASAYII CGGLKKVARA SELIVPVMAV AYLVIALVVL VINIDQVPAA
ISLIVKSAFG WEEAAGGAMG AMMAGIARGL FSNEAGMGSA ANIAASATPN PNHPASQGFV
QMIGVFVDTL VICTASAAII LLSGVLNNPD GQQGIGLLQL ALTNELGSWS AYFIAFAIIL
FCFSSIIANY SYAESNVMFL TKSKKVLFIF RGLVLAMVMA GSVASLSLVW NFADVSMGLM
ALVNIVAIVM LSKVAFAVIK DYERQVKAGL TPTFDSSQFP EIDELEEGIW VMNENSTTES
SPE
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