| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1186 |
|---|
| Symbol | |
|---|
| ID | 5612300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1410491 |
|---|
| End bp | 1412857 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932035 |
|---|
| Product | putative phosphoketolase |
|---|
| Protein accession | YP_001472925 |
|---|
| Protein GI | 157374325 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3957] Phosphoketolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAC AGCAAGAGAT CAGCGCGTTA AAGAAATTGG TAAGAGCTAC AAACTTTCTA
GCGACATCTC AAATTTATCT AAAGAAGAAC GTACTGCATA AGCGTGCACT TGCACACACA
GATATCAAGC CTAGACTATT AGGTCACTGG GGTACTTGCC CTGGTATCAA CTTTGTCTAC
GCTAACATCA ACCGTCTAAT TGTTAAAAAC AGCCGTTCAT TCGTCTACCT TGTAGGCCCA
GGTCACGGTT TCCCAGCAGT ACAAGCTAAC CTTTTCATGG AAGGCTCTCT TAGCCATTAT
TACCCAGAGA TCATTCCATA CAATGAAGAA GGTATCACCG ATATCTGTCA GAAGTTCTCT
GCAGCTTATG GTTACCCTTC ACACGCTAAC CCGGAAGCAC CTGGACAAAT TTTAGAAGGT
GGCGAACTCG GTTATTCACT TTCAGTTGCC TGGGGTGCAG TATTAGATAA CCCAGACCTG
ATTGCCGCTT GTCTGATTGG TGATGGTGAG TCAGAAACTG GTCCTCTTGC CGCTTCTTGG
TATGCAAACC GTTTAGTAGA CCCTGCCACT AACGGTGCGG TACTACCAAT CGTTCATATC
AACGGTTATA AGATCTCTGG TCCAACTCGT ATGGGTCGTA TGAGCCACGA AGAACTTGAT
CTTGAATTCC GTGGTCTGGG TTACCACCCA ATCATCGTTG ACGACGAGCT CGAAGAAGAC
GTCTACGTTC AAATGGCAAA TGCCATGGAC ACGTCATATG AGATGATCAA CGATATCCAG
AAACGTGCGC GCAGTGGTGA AGATGTTGTT AAGCCACGCT GGCCTGTCAT CTTAATGCGT
ACCGCTAAAG GTTGGACGGG TACTGCAGAA TACAATGGCA AGAAACTTGA AGGTAACTGT
GAATCTCACC AGGTTATCGT CAACAAGTGT GCTACAGACA AAGGTCACTT AGAAGCGCTA
AACACTTGGT TATCAAGCTA TAAGTTCGAT GAACTTTATA CTATTAACGA TAAAGGCGAG
CTAATCTTCG ATAAAGAGAT CCAGAGCCTA CTTCCACCTA AACAGTTAAC TTGTGGTCAG
CAACACCTAA GCTACGGTGG TGAAGTGGTT CGTGCACTTG CCAACCCAGA CCTGTCTAAA
CTTGCTTACG GTGCGGAAAC GCCTCGTGGC ACACGTGGTC TATCTATGTA CAAGATGGGT
GAGTGGATGC GTGATGCAAT GAAACTCAAC CGTGACCAAC GTAACCTTCG TATCTTCAGC
CCGGATGAAA CTTACTCGAA CCAGCTTCAA GCCGTATTCG AAGAAACTGA CAGAGCATGG
ATGTGGCCAA TCGAAGAGTG GGATGACGAC ATGGCCCGCG ATGGTCGCGT TATCGAGCTA
CTATCTGAAA ACTTGCTTTT CGGTATGATG CACGGTTATA CAGTGACAGG TCGTCACGCG
ATGTTCCCAA CTTATGAGTC ATTCTCTCAA GTTGTTTCAT CAATGGCAGA CCAATACTGT
AAGTATGTCT ATGCTAGCCA AGGTGTACAC TTCCGTAAGC CGGTACCAGC ATGCAACGTA
GTATTGTCTT CACTGCTTGA GCGTCAGGAT CATAACGGTT ACTCACATCA GAACCCATCA
TTCCTGGGCG CTATGCTTGA GAAACATCCT AAGATTATCT CTGCTTACCT ACCTGCAGAT
GGTAACAGCA CACTGGTTTA CACTGAGCGT GCCTATGCCG ACCGTGATAA GCTAAACATC
ATCGTTGCCG GTAAGAAAGA CTTACCACAA TGGTTATCAC TTGATGAAGC CCGTCAACAA
GCTAAAGATG GTGTTATGGT TTGGGACTTC GCTTCCGATG AAAACCCTGA TGTTGTTCTA
GTTGGTTGTG GTGATTATGT CACTCAAGAA GCGATGGCGG CTCTGGTATT AATCAGAGAG
TTACTACCAC GCGTTCGTAT CCGTTTCGTC AGTGTTTCAG AATTAACCAG CAGCGGTCTA
GGTAGCCTGG ACTTCCAAAG CAAGCCTTGG TTAATGGATG AAGTATTTAC AGCCGATAAG
GGCGTTGTAT TCAACTACCA CGGTTACCCG AACACCATCA AGAAACTTGT ATTCGATTAT
AAGGGCAGTG AGCGCTTCAG AATCAAGGGC TATGAAGAGG AAGGTTCAAC GACCACTCCA
TTCGATATGG GCGTTCGTAA CGGTACTTCT CGTTATCACT TAGTTATTGA TATGGCTTAC
AAGCTATTCC AACAAGGTGT GATCGATGAA ACTCAGCATG TTGCAATTAC AACCGATATG
CTACAGCGCT TAGTTGACCA TAGAAACTAC ATCAAGGCCA ACGGCGTCGA CCCAATCAGC
CTTGATAACT GGGTATGGAC TCGATAG
|
|---|
| Protein sequence | MSQQQEISAL KKLVRATNFL ATSQIYLKKN VLHKRALAHT DIKPRLLGHW GTCPGINFVY
ANINRLIVKN SRSFVYLVGP GHGFPAVQAN LFMEGSLSHY YPEIIPYNEE GITDICQKFS
AAYGYPSHAN PEAPGQILEG GELGYSLSVA WGAVLDNPDL IAACLIGDGE SETGPLAASW
YANRLVDPAT NGAVLPIVHI NGYKISGPTR MGRMSHEELD LEFRGLGYHP IIVDDELEED
VYVQMANAMD TSYEMINDIQ KRARSGEDVV KPRWPVILMR TAKGWTGTAE YNGKKLEGNC
ESHQVIVNKC ATDKGHLEAL NTWLSSYKFD ELYTINDKGE LIFDKEIQSL LPPKQLTCGQ
QHLSYGGEVV RALANPDLSK LAYGAETPRG TRGLSMYKMG EWMRDAMKLN RDQRNLRIFS
PDETYSNQLQ AVFEETDRAW MWPIEEWDDD MARDGRVIEL LSENLLFGMM HGYTVTGRHA
MFPTYESFSQ VVSSMADQYC KYVYASQGVH FRKPVPACNV VLSSLLERQD HNGYSHQNPS
FLGAMLEKHP KIISAYLPAD GNSTLVYTER AYADRDKLNI IVAGKKDLPQ WLSLDEARQQ
AKDGVMVWDF ASDENPDVVL VGCGDYVTQE AMAALVLIRE LLPRVRIRFV SVSELTSSGL
GSLDFQSKPW LMDEVFTADK GVVFNYHGYP NTIKKLVFDY KGSERFRIKG YEEEGSTTTP
FDMGVRNGTS RYHLVIDMAY KLFQQGVIDE TQHVAITTDM LQRLVDHRNY IKANGVDPIS
LDNWVWTR
|
|---|
| |