Gene Ssed_1185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1185 
Symbol 
ID5612299 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1408967 
End bp1409923 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content45% 
IMG OID640932034 
Producttransaldolase B 
Protein accessionYP_001472924 
Protein GI157374324 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0507197 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTAATA CACTCGAACA ATTCAAATCA ATTACGACTA TTGTTGCCGA TACCGGCGAC 
ATTGAAGCCA TCAAGCGTTA CCAACCGGAA GACGCAACGA CCAACCCATC TTTAATATTA
AAAGCAGCTC AGATCCCCGA TTATGCTCAC CTTATCGAAA ATGCGATCGA GTGGGCGAAA
TCGCAAAGTG ATTCCATTGA GCAACAGGTT GAAGATGCAG GTGATAAGCT TGCGGTCAAT
ATTGGTGTCG AAATCTTAAA AATTGTTCCA GGCAGAATCT CAACAGAAGT CGATGCAAGA
CTCTCTTTCG ATAAAGCAGG TTCAATCACT AAAGCTCACA AACTCATCAA GCTTTACAAA
GAAGCTGGAA TTGATAAATC TCGTATCCTC ATCAAGCTAG CCTCTACCTG GGAAGGTATT
TGTGCCGCCA AAGAGCTAGA GCAGGAAGGC ATCAACTGTA ATCTAACCTT GCTCTTTAGT
TTCGCTCAAG CTCGCGCATG TGCAGAAGCA GGGGTTTACC TTATCTCTCC TTTCGTTGGT
CGTATACTCG ATTGGTACAA GAAAGACACA GGCCTTGAGT ATTCTTCTGT AGAAGATCCT
GGGGTCGTTT CGGTAACAGA GATCTACAAC TACTATAAGC GTCACGGATT CAACACTGTA
GTCATGGGTG CAAGCTTCCG TAACACAGGT GAAATCATCG AACTTGCTGG TTGTGATCGT
CTGACTATTG GCCCGGCACT ACTCGAAGAG TTAGCCAACT CACAAACAGA AGTCGTGCGT
AAGCTAATTC CAACAGAAAC TGTTGTTGAT GCAGCAGATC CGCTGACTGA AGCTCAGTTC
CGTTGGGAGT TCAACGAAGA CCCAATGGCA GTCGAAAAGC TAGCCGAAGG GATTAGAAAC
TTCGCTATCG ACCAAGGTAA GCTCGAAGTC ATGCTGAAAG AGAAATTAGC CTGCTAG
 
Protein sequence
MPNTLEQFKS ITTIVADTGD IEAIKRYQPE DATTNPSLIL KAAQIPDYAH LIENAIEWAK 
SQSDSIEQQV EDAGDKLAVN IGVEILKIVP GRISTEVDAR LSFDKAGSIT KAHKLIKLYK
EAGIDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FAQARACAEA GVYLISPFVG
RILDWYKKDT GLEYSSVEDP GVVSVTEIYN YYKRHGFNTV VMGASFRNTG EIIELAGCDR
LTIGPALLEE LANSQTEVVR KLIPTETVVD AADPLTEAQF RWEFNEDPMA VEKLAEGIRN
FAIDQGKLEV MLKEKLAC