Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1185 |
Symbol | |
ID | 5612299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1408967 |
End bp | 1409923 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640932034 |
Product | transaldolase B |
Protein accession | YP_001472924 |
Protein GI | 157374324 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0176] Transaldolase |
TIGRFAM ID | [TIGR00874] transaldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0507197 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTAATA CACTCGAACA ATTCAAATCA ATTACGACTA TTGTTGCCGA TACCGGCGAC ATTGAAGCCA TCAAGCGTTA CCAACCGGAA GACGCAACGA CCAACCCATC TTTAATATTA AAAGCAGCTC AGATCCCCGA TTATGCTCAC CTTATCGAAA ATGCGATCGA GTGGGCGAAA TCGCAAAGTG ATTCCATTGA GCAACAGGTT GAAGATGCAG GTGATAAGCT TGCGGTCAAT ATTGGTGTCG AAATCTTAAA AATTGTTCCA GGCAGAATCT CAACAGAAGT CGATGCAAGA CTCTCTTTCG ATAAAGCAGG TTCAATCACT AAAGCTCACA AACTCATCAA GCTTTACAAA GAAGCTGGAA TTGATAAATC TCGTATCCTC ATCAAGCTAG CCTCTACCTG GGAAGGTATT TGTGCCGCCA AAGAGCTAGA GCAGGAAGGC ATCAACTGTA ATCTAACCTT GCTCTTTAGT TTCGCTCAAG CTCGCGCATG TGCAGAAGCA GGGGTTTACC TTATCTCTCC TTTCGTTGGT CGTATACTCG ATTGGTACAA GAAAGACACA GGCCTTGAGT ATTCTTCTGT AGAAGATCCT GGGGTCGTTT CGGTAACAGA GATCTACAAC TACTATAAGC GTCACGGATT CAACACTGTA GTCATGGGTG CAAGCTTCCG TAACACAGGT GAAATCATCG AACTTGCTGG TTGTGATCGT CTGACTATTG GCCCGGCACT ACTCGAAGAG TTAGCCAACT CACAAACAGA AGTCGTGCGT AAGCTAATTC CAACAGAAAC TGTTGTTGAT GCAGCAGATC CGCTGACTGA AGCTCAGTTC CGTTGGGAGT TCAACGAAGA CCCAATGGCA GTCGAAAAGC TAGCCGAAGG GATTAGAAAC TTCGCTATCG ACCAAGGTAA GCTCGAAGTC ATGCTGAAAG AGAAATTAGC CTGCTAG
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Protein sequence | MPNTLEQFKS ITTIVADTGD IEAIKRYQPE DATTNPSLIL KAAQIPDYAH LIENAIEWAK SQSDSIEQQV EDAGDKLAVN IGVEILKIVP GRISTEVDAR LSFDKAGSIT KAHKLIKLYK EAGIDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FAQARACAEA GVYLISPFVG RILDWYKKDT GLEYSSVEDP GVVSVTEIYN YYKRHGFNTV VMGASFRNTG EIIELAGCDR LTIGPALLEE LANSQTEVVR KLIPTETVVD AADPLTEAQF RWEFNEDPMA VEKLAEGIRN FAIDQGKLEV MLKEKLAC
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