| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1179 |
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| Symbol | |
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| ID | 5612315 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1401699 |
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| End bp | 1402559 |
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| Gene Length | 861 bp |
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| Protein Length | 286 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640932028 |
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| Product | deoxyribonuclease IV (phage-T(4)-induced) |
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| Protein accession | YP_001472918 |
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| Protein GI | 157374318 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0648] Endonuclease IV |
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| TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCTT CAAGATGGAT AGGTGCACAT GTCAGTGCCG CCGGTGGAAT CGAGAACGCC
CCTATCAATG CAAAGAAGAT TGGGGCGAAT GCATTCGCAC TTTTCACTAA AAATCAGCGC
CGCTGGCAAG CCGCCCCACT GGCACAGGCA AATATTGAAC AATTTAAGGA TAACTGCAGA
CAGGCTAATA TTCCCGGCAG TGCAATATTG CCTCACGACA GCTATCTGAT AAACCTTGGT
CATCCGGATA ACATTCAGCT GGATAAATCG AGAGAGGCAT TCTTTGATGA GATAGAACGC
TGTGAACAGT TGGGGTTATC GTTACTCAAT TTTCATCCCG GTAGTCATCT GAGAAAAATA
GAGATCGATG AGTGCTTGTC AAGGATAAGC CAGTCGATAA ACATGGCGTT AGAGCGTTCG
ACAGGTGTTA CCGCAGTCAT TGAAAATACG GCGGGACAAG GTTCTAATTT AGGTCACAGC
TTCGAGCAAC TGGCCCAGAT TATTGATGGC GTAGAGGATA AATCCCGTGT TGGTATATGC
ATAGATACCT GTCACATGTT TGCAGCTGGA TATGATTTAA CAACAAAGGC AGCCTGTCAG
GAGAGCTTTG AGTTATTTGA CCGCATAGTG GGTAATCAAT ATCTCAAAGC CATGCATCTG
AACGACAGTA AAACCCCGTT AAATAGCCGG GTAGACAGGC ATGAATCTCT CGGGCTTGGC
CATATAGGTC AAGAGGCATT TAGCTTCTTA ATGAACCTTG AGGCAACGAA AAATATCCCA
ATGGTATTAG AGACTATCAA CTCAGATATT TGGGAAGATG AGATAAACTG GCTACGTAGT
TTGAGCTATG AACGCCAGTA A
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| Protein sequence | MTSSRWIGAH VSAAGGIENA PINAKKIGAN AFALFTKNQR RWQAAPLAQA NIEQFKDNCR
QANIPGSAIL PHDSYLINLG HPDNIQLDKS REAFFDEIER CEQLGLSLLN FHPGSHLRKI
EIDECLSRIS QSINMALERS TGVTAVIENT AGQGSNLGHS FEQLAQIIDG VEDKSRVGIC
IDTCHMFAAG YDLTTKAACQ ESFELFDRIV GNQYLKAMHL NDSKTPLNSR VDRHESLGLG
HIGQEAFSFL MNLEATKNIP MVLETINSDI WEDEINWLRS LSYERQ
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