| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1176 |
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| Symbol | |
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| ID | 5612312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1398493 |
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| End bp | 1399431 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932025 |
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| Product | homoserine kinase |
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| Protein accession | YP_001472915 |
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| Protein GI | 157374315 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0083] Homoserine kinase |
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| TIGRFAM ID | [TIGR00191] homoserine kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTGA CTGTATATGC ACCGGCTTCT ATGGGTAATG TCGGAGTAGG CTTCGATCTG
CTCGGTGCGG CGCTCGCTCC GATAGATGGC ATTCTGCTCG GAGATCGAGT CAGTATCTCA
TCGGCCGATA GTGGCATTAA TTTGTCTCTT GCCGGTCGAT GGGCTGAGAA GCTACCACAA
GATCCGCAAG AAAATATTGT TTATCAATGT GCTGAGTTCT TTCTCGAGCA GCTGGGTAAA
GAGGAGGGGC TTTCACTCAC ATTAGAGAAA AACCTTCCCG TAGGCAGCGG CTTGGGGTCG
AGCGCAAGCT CAGTCGTAGC GGCGCTTTAT GCACTGAATG AATATTTTGA TTCCCCCTAT
AATGAACAAG AACTATTGAG ATTGATGGGG AAGTTTGAGG GCAAGATTAG CGGCTCAGTT
CATTATGATA ATGTCGCTCC ATGTTACTTA GGTGGAATGC AGTTGATGCT GGATACCCCT
GAGAGGGTGT GTGATGCCAT TCCGACATTT GAGAACTGGT ATTGGGTTGT TGCATACCCA
GGGATCTCAC TATCAACCGC CAAAATGCGT GAGTTATTAC CGAGTAAATA CGATAAGTCT
GTGGCAATCG ATTTTGGCCG TTATCTTAGC GCATTTGTTC ATGCGTCATA TCGTCAAGAT
CCCACGATGG CAATTTCAGT GCTGAAAGAT GTATTGGCCG AGCCCTACCG AGCGTCGGCT
ATTCCCGGTT ATGAAGAGTC AAGAGCTGCA CTCGCAAAGA TTGGCATGCT AACGACCGGA
ATTTCCGGTA GTGGTCCCAC TCTGTTTTCT GTCACGGACA GCTTAGACAC GGCAAACAAA
GCGCAGGAAT GGCTTGAGCA GAATTACTTG GAGCAAGGGG GATTTTCCCA TATCTGTAAA
ATAGATGCTC AAGGTGCCCG TTCAACGGAA GATATCTAG
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| Protein sequence | MSLTVYAPAS MGNVGVGFDL LGAALAPIDG ILLGDRVSIS SADSGINLSL AGRWAEKLPQ
DPQENIVYQC AEFFLEQLGK EEGLSLTLEK NLPVGSGLGS SASSVVAALY ALNEYFDSPY
NEQELLRLMG KFEGKISGSV HYDNVAPCYL GGMQLMLDTP ERVCDAIPTF ENWYWVVAYP
GISLSTAKMR ELLPSKYDKS VAIDFGRYLS AFVHASYRQD PTMAISVLKD VLAEPYRASA
IPGYEESRAA LAKIGMLTTG ISGSGPTLFS VTDSLDTANK AQEWLEQNYL EQGGFSHICK
IDAQGARSTE DI
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