Gene Ssed_1175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1175 
SymbolthrA 
ID5611503 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1396031 
End bp1398496 
Gene Length2466 bp 
Protein Length821 aa 
Translation table11 
GC content47% 
IMG OID640932024 
Productbifunctional aspartokinase I/homeserine dehydrogenase I 
Protein accessionYP_001472914 
Protein GI157374314 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0460] Homoserine dehydrogenase
[COG0527] Aspartokinases 
TIGRFAM ID[TIGR00657] aspartate kinase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGTAA TGAAGTTTGG TGGTACCTCG CTGGCAAATT GGCAACGATT TAATACGGCA 
GCAGATATCG TGGTCGATAC CGCTAAGAGC GAGTCGGTTG CAGTGGTTTT GTCAGCACCG
GCGACGGTAA CCAATGGTTT GCTTGAGATG GTCGATGTTG CGGTTAGCGG CGAAGACTTC
AAACCCGTTT TATCGGGTGT TGAACAGGTA TTCAGCTCCT TGTATCAGAG TGCCTCCTCT
GTTTTACAGT CCGGGCAAGT GACCCCTTTA ATGGAGCGTC TGTCTCAGCA ACTTAGTCAC
TGGGAAAACA AATTACTTGG CATCAGTCTT TTAAAAGAAT GTCCCGATTT TGTTCGCGCC
GATATTCTGG TTGGTGGAGA AAAACTTTCC GCTGCCCTTA TGACGCAATT AATGGTTGCC
AAAGGTCTCA GCTCTAACGT TTTTGAGCCA CAATCTCTGT TTCTTGCTTC GGGTGACCCA
TTAGAATCTG TGGTCGATAT CGAGTCGAGT AAGGCACGCT TCAAGCGAGT AGCACTAGAT
GAATATCGTG TCTGGGTGAT GCCGGGCTTT ACCGCCGGTG ATAAAGAGGG TCGCACTGTC
ACACTCGGAA GGAATGGTTC TGATTACTCT GCTGCGGTTT TATCGGCATG TTTAGATGCC
AGCTGTTGTG AAATCTGGAC AGATGTTGAC GGCGTCTATA ATACCGACCC CCGAGTGGTT
ACCGATGCGA AATTACTTTC TCAGTTAAGC TACCAAGAGG CGATGGAGCT TTCCTATTTT
GGTGCTAAGG TATTGCATCC AAAAACAATC TCACCTATCG CCCAGTACCA TATTCCATGC
TATATCAGAA ATAGCTTTAA TCCAAAGGCT CCAGGAACGC TTGTTTCGAA TGAAGCAGAT
GAAAGTGGCT TGAATGTAAA GGCCATCTCG AATTTAGATG AGCAAACTAT GTTTGATATT
TCGGGACCCG GAATGAAAGG CATGGTGGGC ATGGCGAGCC GTACTCTCGG CGCCATCTCG
CGTTCGGGGA TCTCCATCTC TCTAATAACT CAAAGCTCCT CTGAATATAG CATCAGCTTT
TGTGTGGCGA CTCAAGATGC CGCTAAGGCA AAAGAATCTC TGGAGCTGGA GTTTGAACTG
GAATTAAAGA GTGAAATTCT TGAACCAATA GAGATGAGGC ATGAGTTAGC CATTGTCTCG
TTAATTGGGG ATGGAATGCG GACCCATAAA GGCGTTGCGG GTAAGTTTTT CCAGGCATTG
GCTCAAGCGA CAGTTAATAT CGTCGCTATC GCTCAGGGAT CCTCAGAACG TTCAATATCA
ACGGTTATCG AACAGCGCAA AACCAAGCAT GCGATTTCGG CCTGTCATCA AAGCTTTTTC
GATGTTCAAC ATTATCTCGA CGTGTTCTTA GTTGGCTGCG GTAATGTTGG CGCCGGTTTA
CTCGAGCAGA TAAAGCAGCA GGCAGAAATG TTGAAACAGC AACACATCAC CATTCGTGTG
TGTGGTATTG CTAACTCCAG GCATATGCTG CTCGATGCCA AAGGCGTAGA TCTCAGCGGA
TGGCAGAGTC TGTTGTCAGA TTGTCAAACT GAGTGCGATC TGGACCTGAT GCTTAAGTGG
GCTAAAGAAC AGCAACTGCT TAATCCTGTG TTGGTTGACT GTACCTCCAG TGAGTATGTA
TCGGATAAAT ATCTGGATGT GATGAATGCC GGTTTGCATG TCGTCACACC CAATAAAAAA
GCGAATACCC GGGATATAGA ATATTACCGC GCACTACGTG CGACGGCATT GAAACAGCGC
AGACAGTTCC TTTATGAAAC AACAGTAGGG GCTGGCTTAC CTGTGATAGA TAACTTGAAA
AAACTGTTGT TCGCCGGGGA TAAGTTACTC AAATTTAATG GCATCTTATC CGGCTCGCTC
TCCTATATAT TCGGCATGCT CGATGAGGGA ATGACACTCT CGGAGGCGAC AGGTATTGCC
AGAGATAAGT GTTTTACTGA GCCCGATCCA CGCGATGACT TAAGTGGTAT GGATGTCGCG
AGAAAGGTAC TTATCCTGGC CCGTGAAGTG GGTTTAGATT TAGAGCTAGA TGATATTAAC
ATCGAGTCTG TGTTACCAGA TTCTTTTGAT GCCGATGGTG ATGTTGAGAC TTTCATGGTG
AACCTGCCAA AGCTCGATCA GCAGATCGCA CTCTGGGTAG AGAAGGCCCG CAGTGAAGGT
AAAGTTCTTA GGTATGTGGG GCAGATCGAT GATGATGGTT GCCGCGTTAA AATAGCCGAA
GTCGATGCAA GCGACCCACT GTATAGTGTT AAAGGCGGTG AGAACGCACT GGCATTCTAT
AGCCGTTACT ATCAGCCGAT TCCCTTTGTG CTGAGAGGCT ATGGTGCAGG AACTGACGTT
ACCGCTGCCG GGGCATTTGC CGATCTACTG AGAACATTAA ACTGGACGCG GGAGATGAGC
TCATGA
 
Protein sequence
MKVMKFGGTS LANWQRFNTA ADIVVDTAKS ESVAVVLSAP ATVTNGLLEM VDVAVSGEDF 
KPVLSGVEQV FSSLYQSASS VLQSGQVTPL MERLSQQLSH WENKLLGISL LKECPDFVRA
DILVGGEKLS AALMTQLMVA KGLSSNVFEP QSLFLASGDP LESVVDIESS KARFKRVALD
EYRVWVMPGF TAGDKEGRTV TLGRNGSDYS AAVLSACLDA SCCEIWTDVD GVYNTDPRVV
TDAKLLSQLS YQEAMELSYF GAKVLHPKTI SPIAQYHIPC YIRNSFNPKA PGTLVSNEAD
ESGLNVKAIS NLDEQTMFDI SGPGMKGMVG MASRTLGAIS RSGISISLIT QSSSEYSISF
CVATQDAAKA KESLELEFEL ELKSEILEPI EMRHELAIVS LIGDGMRTHK GVAGKFFQAL
AQATVNIVAI AQGSSERSIS TVIEQRKTKH AISACHQSFF DVQHYLDVFL VGCGNVGAGL
LEQIKQQAEM LKQQHITIRV CGIANSRHML LDAKGVDLSG WQSLLSDCQT ECDLDLMLKW
AKEQQLLNPV LVDCTSSEYV SDKYLDVMNA GLHVVTPNKK ANTRDIEYYR ALRATALKQR
RQFLYETTVG AGLPVIDNLK KLLFAGDKLL KFNGILSGSL SYIFGMLDEG MTLSEATGIA
RDKCFTEPDP RDDLSGMDVA RKVLILAREV GLDLELDDIN IESVLPDSFD ADGDVETFMV
NLPKLDQQIA LWVEKARSEG KVLRYVGQID DDGCRVKIAE VDASDPLYSV KGGENALAFY
SRYYQPIPFV LRGYGAGTDV TAAGAFADLL RTLNWTREMS S