Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1172 |
Symbol | |
ID | 5612147 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1393827 |
End bp | 1394105 |
Gene Length | 279 bp |
Protein Length | 92 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640932021 |
Product | Trp operon repressor |
Protein accession | YP_001472911 |
Protein GI | 157374311 |
COG category | [K] Transcription |
COG ID | [COG2973] Trp operon repressor |
TIGRFAM ID | [TIGR01321] trp operon repressor, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGCTG AATGGGGACT TGTGTTAGAG AAAGTGGTAA ATCACCATGA TCACAACGCA TTGTTGGAAC TGTTTGAATT ATTGCTGACA GAAGATGAAC GCAGTGCTAT CGCTGGTCGA CTTAAGGTTT TTCAAGCATT GCTTAAAGGG GAGATGAGCC AGCGTCAGAT AGCTTGTGAA TTTCAAATTA GTATTGCGAC CATTACGCGC TGCTCAAACT ACCTTAAACA TATGTCAGCT GAGCAGCGAG AAAAAATTAA GCATTTGATA TTAGAGTAA
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Protein sequence | MRAEWGLVLE KVVNHHDHNA LLELFELLLT EDERSAIAGR LKVFQALLKG EMSQRQIACE FQISIATITR CSNYLKHMSA EQREKIKHLI LE
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