Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1163 |
Symbol | |
ID | 5613819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1382435 |
End bp | 1383526 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932012 |
Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
Protein accession | YP_001472902 |
Protein GI | 157374302 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000535062 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCAAG ATACAATTAA TAATGTTCAT ATCAGTTCAG AGAAAGTATT AGTGACTCCA CAGGAGTTAA AACTTGAGCT CCCTCTATCT GAACATGCCT ATCATTATGT GTTAAATGCA CGTAAGACTG TTGCCGATAT CGTCCATAAA CGTGATAACC GCGTGCTCAT TGTCACCGGT CCCTGCTCAA TCCATGATAT TGCTTCGGCG AAAGAGTACG CACTTAAACT CAAGAAGCTT CATGATGAGC TCAGCGATGA GTTCTACATT CTTATGCGCG TATACTTCGA AAAGCCTCGC ACAACGGTTG GTTGGAAAGG CATGATTAAT GACCCGGATA TGGATGAGTC ATTCGACGTC GAAAAGGGGT TACGTCAGGC CAGAGAGTTG ATGATCTACT TAGCCGAGCT TGGCCTGCCG GTGGCTACCG AAGCCTTAGA CCCTATCAGC CCGCAGTACA TGTCGGAGCT GGTTACCTGG TCGGCAATTG GGGCTCGTAC CACTGAATCA CAAACCCACA GAGAGATGGC GTCGGGTTTG TCTATGCCGG TTGGATTTAA AAATGGCACA GATGGCAAGC TTGGGGTGGC AATTAATGCT TTGGAATCTG CCGCCAGTGG TCATCGTTTC ATGGGGATTA ACCAGAAAGG ACAAGTTGCC CTGTTGCAAA CCGCGGGTAA TCCTGACGGT CACGTGATCT TACGCGGTGG CAAAACACCT AACTATGATT CTGGAAGTGT TGCCGAGTGT GAGCGTCAGC TTCACAGTGC AAATCTTAAT GCACGTTTAA TCGTGGATTG TAGCCACGGA AATTCATCAA AGGATCATCG CAAGCAGAAG GGCGTCTGTG AAGATGTGTT TGGCCAAATT TCAGACGGCA ATCAATCCAT CATAGGCGTC ATGTTAGAGA GTCACCTAAA TGAGGGAAAT CAGAGTAGCA ATAAGCCCAT GGACGAGCTC GATTACGGTG TATCTGTGAC GGATGCCTGC ATAGATTGGG AAACCACTGA GCAGATATTA CGCGATGGTT CGGCCTTATT GTCTTCGGTT TTACCAACTC GATTTGATAT GCTTAAGGTT GCCAACGCCT GA
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Protein sequence | MQQDTINNVH ISSEKVLVTP QELKLELPLS EHAYHYVLNA RKTVADIVHK RDNRVLIVTG PCSIHDIASA KEYALKLKKL HDELSDEFYI LMRVYFEKPR TTVGWKGMIN DPDMDESFDV EKGLRQAREL MIYLAELGLP VATEALDPIS PQYMSELVTW SAIGARTTES QTHREMASGL SMPVGFKNGT DGKLGVAINA LESAASGHRF MGINQKGQVA LLQTAGNPDG HVILRGGKTP NYDSGSVAEC ERQLHSANLN ARLIVDCSHG NSSKDHRKQK GVCEDVFGQI SDGNQSIIGV MLESHLNEGN QSSNKPMDEL DYGVSVTDAC IDWETTEQIL RDGSALLSSV LPTRFDMLKV ANA
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