Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1161 |
Symbol | trmD |
ID | 5614040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1380953 |
End bp | 1381681 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932010 |
Product | tRNA (guanine-N(1)-)-methyltransferase |
Protein accession | YP_001472900 |
Protein GI | 157374300 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000761862 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGTTAG GGGTAGTAAC CCTGTTTCCT GAGATGTTTC GCGCCGTAAC AGACTTTGGA GTAACGGGTC GGGCCGTTAA AAATGGCCTG CTGGAGTTGC AAACGTGGAA TCCTCGTGAT TTCACCCATG ATAAACATAA GACAGTGGAT GACCGACCTT ATGGCGGTGG CCCTGGCATG TTAATGATGG TGCAGCCTTT ACGCGATGCT ATTCATGCGG CGAAAGCTGC GACTGGCGAC AGTGCGAAGG TGATTTATCT ATCTCCTCAA GGACGCAAGC TTACACAGCA AGGCGTCGAA GAGTTAGTTA AGTCAGACAG TTTGATTTTA GTGTGCGGTC GATACGAAGG TATAGACGAA CGCATTATTC AAACTGAAGT GGATGAAGAG TGGTCTATTG GAGATTACGT GCTTTCGGGC GGTGAACTTC CTGCAATGAC TCTGATTGAT TCAGTATCAC GGCTGGTTCC TGGTGTACTA GGAAAGAAAG CCTCGGCAGA GCAGGATTCC TTCTCTGACG GATTATTGGA TTGTCCCCAC TATACTCGTC CTGAAACCTT GGATAACTTA GATGTACCGG CAGTGTTGTT AAGTGGCAAC CACGAACATA TTAGACGCTG GCGTCTACAA CAGAGTCTCG GTAGAACTTT GTTAAGACGA CCAGATTTAT TAGAAAATCT AGCTCTGACT GACGAACAAA CGAAGCTGTT AAATGAGTTT GTTGAATAA
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Protein sequence | MRLGVVTLFP EMFRAVTDFG VTGRAVKNGL LELQTWNPRD FTHDKHKTVD DRPYGGGPGM LMMVQPLRDA IHAAKAATGD SAKVIYLSPQ GRKLTQQGVE ELVKSDSLIL VCGRYEGIDE RIIQTEVDEE WSIGDYVLSG GELPAMTLID SVSRLVPGVL GKKASAEQDS FSDGLLDCPH YTRPETLDNL DVPAVLLSGN HEHIRRWRLQ QSLGRTLLRR PDLLENLALT DEQTKLLNEF VE
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