| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1158 |
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| Symbol | |
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| ID | 5614037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1378460 |
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| End bp | 1379833 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932007 |
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| Product | signal recognition particle protein |
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| Protein accession | YP_001472897 |
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| Protein GI | 157374297 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0541] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000642448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAGA ACCTAACGGA CAGACTGTCA CGAACGCTGA AAAATATCAG TGGTCGTGGG
CGCTTAACTG AAGATAATGT TAAGGATACC TTACGAGAAG TGCGCATGGC GCTACTTGAG
GCTGATGTTG CTTTGCCTGT TGTACGAGCT TTCGTCAACG GTGTAAAAGA ACGTGCTGTT
GGCTTGGAGG TTTCAAAAAG TTTAAGTCCG GGTCAGGCAT TTATTAAGAT AGTCCAGAGC
GAGTTAGAAA ACGCGATGGG TGAGGCGAAC GAAGGGTTAG ATCTATCGGC TCAACCTCCA
GCAGTCATTA TGATGGCTGG TCTGCAAGGT GCCGGTAAAA CAACCAGTGT CGCCAAGTTA
TCTAAGTTCC TACGTGAAAG AGATAAAAAA TCGGTACTGG TTGTTAGTGC CGACGTTTAT
CGTCCGGCGG CGATTAAACA GCTTGAAACA TTGGCCGCTG AGGTGGAAGT CGAATTCTTC
CCGTCAGATG TAAGCCAGAA GCCTATCGAT ATCGTCAATG CGGCCATGAC TCATGCCAAG
CTGAAGTTTA TCGACGTGGT AATTGTCGAT ACTGCAGGTC GTTTGCATGT CGATGAAGGC
ATGATGGATG AGATCAAGGC GCTTCATGCC GCGGTCAATC CTGTCGAGAC ACTTTTTGTC
GTCGATGCAA TGACGGGTCA AGATGCGGCC AATACGGCTA AAGCCTTTAA TGAAGCGCTA
CCATTAACCG GTGTCGTATT GACCAAGGTC GATGGTGATG CTCGAGGCGG TGCCGCTTTA
TCTATTCGTC ATATTACCGG TAAACCGATT AAGTTCTTAG GTGTGGGCGA GAAAACCGAC
GCTCTGGAGC CATTCCACCC GGATCGTATT GCATCACGTA TCTTAGGTAT GGGTGACGTA
CTGTCACTGA TTGAAGAGGT TGAACGCGGC GTCGATAAAG ACAAGGCGAT GAAGCTGGCT
TCCAAAGTGA AGAAAGGTGG CAGTTTCGAC CTTGAAGATT TCCGTGAGCA ACTTCAGCAG
ATGAAGAACA TGGGCGGCAT GATGGGTATG ATTGAGAAGC TTCCCGGAGT TGGACAACTG
CCTCCCGAAG CCTTAGCTCA AGTGCAAAAT GGCAAGATGA CGAATCAGAT GGAAGCCATC
ATCAACTCTA TGACCAAAGG TGAGCGTGCT CGCCCGGATA TGATTAAAGG TTCGCGTAAG
CGCCGTATCG CTCAGGGTTC CGGCACTCAG ATCCAAGACG TTAACCGTCT ATTGAAGCAG
TTCAGCCAGA TGCAGAAGAT GATGAAGAAG ATGTCTGGTA AAGGCGGCAT GAAGAAGATG
ATGCGTGGCA TGGGTGGCAT GTTGCCCCCA GGAATGAAGA TGCCGGGTCG CTAG
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| Protein sequence | MFENLTDRLS RTLKNISGRG RLTEDNVKDT LREVRMALLE ADVALPVVRA FVNGVKERAV
GLEVSKSLSP GQAFIKIVQS ELENAMGEAN EGLDLSAQPP AVIMMAGLQG AGKTTSVAKL
SKFLRERDKK SVLVVSADVY RPAAIKQLET LAAEVEVEFF PSDVSQKPID IVNAAMTHAK
LKFIDVVIVD TAGRLHVDEG MMDEIKALHA AVNPVETLFV VDAMTGQDAA NTAKAFNEAL
PLTGVVLTKV DGDARGGAAL SIRHITGKPI KFLGVGEKTD ALEPFHPDRI ASRILGMGDV
LSLIEEVERG VDKDKAMKLA SKVKKGGSFD LEDFREQLQQ MKNMGGMMGM IEKLPGVGQL
PPEALAQVQN GKMTNQMEAI INSMTKGERA RPDMIKGSRK RRIAQGSGTQ IQDVNRLLKQ
FSQMQKMMKK MSGKGGMKKM MRGMGGMLPP GMKMPGR
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