| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1155 |
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| Symbol | |
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| ID | 5609877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1375082 |
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| End bp | 1375627 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640932004 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472894 |
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| Protein GI | 157374294 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4539] Predicted membrane protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.402459 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAATCCG CCGAAGAGCA GTTATCGACC TATAAGAGTG TTCATTTGAA CCCGAAGAAT
ATCAGGACTC ATTTTGTCGG CATTCCGCTG ATTATCTGGT CTCTGTTCTT GCTGCTAAAT
CTTATTCCTG TGAAGTTTTT TGCTCTTGAT GAGCCCGCCA TCAGCATTAA TGTTGCTGGT
GCCTTTACTA TTGGCGTTCT CATCTATTAC ATCAGGCTGC ATGCCCGTTT GGCCATAGGG
TTAACCTTGT TTATCATTCC GGTATTGTAT ACCTCACATC TTGTGGCTCA GCTACTGGGG
GCCGTTTGGA TAGCGCTAGC CGTGTTTGTT ATTGGTTGGG TGTTTCAACT GATTGGTCAT
CAATATGAGA AGGCAAAGCC TGCATTTGTG GATGACTTGA ATCAGTTGCT TATCGGGCCG
TTCTTTTTAA TGGCCGAAGT GTATTTTATG CTTGGGTTCG AGAAACAGTT AGATAAGCGG
ATAACGCCGA TGGCGATTGA TAAGCGACGG GTGCTTGAAA CTGAGCGCCG CGCGGCACGT
GGGTGA
|
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| Protein sequence | MKSAEEQLST YKSVHLNPKN IRTHFVGIPL IIWSLFLLLN LIPVKFFALD EPAISINVAG
AFTIGVLIYY IRLHARLAIG LTLFIIPVLY TSHLVAQLLG AVWIALAVFV IGWVFQLIGH
QYEKAKPAFV DDLNQLLIGP FFLMAEVYFM LGFEKQLDKR ITPMAIDKRR VLETERRAAR
G
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