| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1150 |
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| Symbol | |
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| ID | 5610299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1370385 |
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| End bp | 1371065 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931999 |
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| Product | DNA repair protein RecO |
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| Protein accession | YP_001472889 |
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| Protein GI | 157374289 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1381] Recombinational DNA repair protein (RecF pathway) |
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| TIGRFAM ID | [TIGR00613] DNA repair protein RecO |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.674395 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTACGCG GTTATGTGCT GCACACTCGT CCCTTTCGTG ACTCGAGTGT ATTAGTGAAT
ATGTTGGTCG ATGGTCAGGG GAGAGTCGAT TGCGTCGCTC GTTTAGGGAG TGGCAAGAGC
TCAATCAAGA GTATTTTACA ACCTTTTCAG CCCCTTATTT TTGAACTTTC TGGCCGCTCC
AGCCTTAAGA ACCTCTCCCA AGTTGAAGCT GCGAGTCCGG CTATTCCTTT AAGTGGCGAG
GTGAGCTTCT CGGGATTCTA TCTCAATGAG TTACTCGTAC GCTGCACCAG TGTCGATCAT
GGTGGTGAGG CACTCTTCTT TACCTACCAC AGAACCTTAA TGGCGATGGC TGCCGGTTTC
TGCCAGAGTC AGTTGAGGTA CTTTGAGTTA GAATTGCTCA AAGAGATAGG CTTGATGCCG
ACGCTCACCG TCGACATCAG TCAAGACGCC ATCGAAGCCG ATTACTATTA TCGTTTGTTG
CCTGATGAAG GTTTTGTCAG TGCTCTGGGC CCTAAGACCA CCCACTATAG CGGAGAGATG
TTGCTGGCAC TGAATGAGCA TAAGTTGCTG CCTGCACATT TTAAACAGGC CAAACACCTG
ATGCGCCTGA TGTTAGGCCC CTGTTTGGGT GATAAACCTT TGAAGTCGAG GGCGCTATTT
AAATATCGAC CAACATCATA A
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| Protein sequence | MLRGYVLHTR PFRDSSVLVN MLVDGQGRVD CVARLGSGKS SIKSILQPFQ PLIFELSGRS
SLKNLSQVEA ASPAIPLSGE VSFSGFYLNE LLVRCTSVDH GGEALFFTYH RTLMAMAAGF
CQSQLRYFEL ELLKEIGLMP TLTVDISQDA IEADYYYRLL PDEGFVSALG PKTTHYSGEM
LLALNEHKLL PAHFKQAKHL MRLMLGPCLG DKPLKSRALF KYRPTS
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