| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1144 |
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| Symbol | |
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| ID | 5610976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1364174 |
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| End bp | 1365106 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931993 |
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| Product | sigma E regulatory protein, MucB/RseB |
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| Protein accession | YP_001472883 |
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| Protein GI | 157374283 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3026] Negative regulator of sigma E activity |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000271623 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTCTTA TCCTATTGGG TTTGTTGTTT CTGAATTTCC CTGTGATGGC ACAGGAAGTG
ATATCGGCTA AGGCTTGGCT GGAAAATATG AGTCAAGCCT TGCGTGAGCA AGAGTTTAAG
ATCTCCCTGA TACAGCTTCA AGCTGATCAT ATAAGGCCAT TAGTTTATAT TCACGGTAAA
ATTGAAAACC AAGAAGTGGC TTTTCTCGAG CACCTCAATG GCCCGCCAAA AAATGCAGTC
AGAGTTGGCC AGACTGTTAC CTTTATTGAA CATGACCAAC CCGCATACAG TGTCGCTGCA
AAACGCATAC AAGGGCTCTT TCCGCCAGCA TTTGCCGGTG ACTTTTCCGC GTTAGAGCCG
GGTTATCAGT TCGTTCTTGG TGGACGAACT CGCTTAGCCG GTCGTCCCAG TCAGTTAGTG
CGCATTATTC CCAATGACGA CTATCGTTAC GGGTACCAAG TATGGTTGGA TATGGAAACA
TCACTTCCAC TGCGATATGA CATGCTGACT CAAGACAAGC AACTGCTCGA ACAGATACTT
GTGGTCGAGC TATTAGTGCT CGATGACGTT CCAGCTATTC TCCATGAAGC CTATAAACAG
GAGTGGCCGG CCGTTGTCTC TCAATCTGAA CGCGATGCAG GCGATAACTG GCAGTTTAAA
TGGTTACCCA CTGGTTTTGA GGTGTTGGTT AAAGATAGCC ACAGGCTCAT GGGCAGTCAT
GAAGCTGTGG AATATATTGC TTTAAGCGAT GGGATTGCCA ATATTTCGGT GTATGTTGCA
AGGGCCGGTG ACGCTCAGAT GCCCGAGGAG TTAGTGACAC GAAATGGATT GTCATTAGCG
ACAGAGAGAG TGGGTAATGC TGAAGTTGTT GCTGTGGGTA AGGTTCCTAC AGAGACCTTG
GTTCGCGTAG CTAAAAGCAT AACGATTGAG TAA
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| Protein sequence | MRLILLGLLF LNFPVMAQEV ISAKAWLENM SQALREQEFK ISLIQLQADH IRPLVYIHGK
IENQEVAFLE HLNGPPKNAV RVGQTVTFIE HDQPAYSVAA KRIQGLFPPA FAGDFSALEP
GYQFVLGGRT RLAGRPSQLV RIIPNDDYRY GYQVWLDMET SLPLRYDMLT QDKQLLEQIL
VVELLVLDDV PAILHEAYKQ EWPAVVSQSE RDAGDNWQFK WLPTGFEVLV KDSHRLMGSH
EAVEYIALSD GIANISVYVA RAGDAQMPEE LVTRNGLSLA TERVGNAEVV AVGKVPTETL
VRVAKSITIE
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