Gene Ssed_1142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1142 
Symbol 
ID5613797 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1362918 
End bp1363496 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content46% 
IMG OID640931991 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_001472881 
Protein GI157374281 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000720782 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGGAC AAATAAGTGA TCAACAATTA GTTGAACGTG TACAGCAGGG AGATAAAAAC 
GCTTTTAACC TTTTGGTGCA GAAGTATCAA AACAAGGTCA TGAGTTTGAT TGCACGTTAC
GTGCGTAATC AGGCCGACGT TGCTGATGTC GCTCAGGAAG CCTTTATAAA AGCTTACCGA
GCCTTGCCCA ATTTTCGTGG TGAAAGTGCT TTTTATACCT GGTTATACCG AATTGCGGTT
AACACAGCGA AGAATCATTT GGTTGCACAG GGGCGACGCG CACCTGCAAA TGATATCGAT
GCAGAGGAAG CCGAATATTA TGATGGCAGC GACGCCTTAA AGGAGTTTGC ATCTCCGGAG
CGTTTGATGC TGTCGGATGA GATCCAGAAG GTTGTCTTTG ACACCTTGGA CACATTGCCA
GAAGAATTAA AGATGGCTAT TTCGTTGCGA GAGCTCGATG GTATGAGTTA CGAAGAGATA
GCAAACGTCA TGGATTGCCC CGTCGGTACT GTAAGATCTC GGATCTTCAG GGCTCGAGAG
GCGATTGATA AAAAGCTTCA GCCTTTGCTG GAGCAGTAG
 
Protein sequence
MSGQISDQQL VERVQQGDKN AFNLLVQKYQ NKVMSLIARY VRNQADVADV AQEAFIKAYR 
ALPNFRGESA FYTWLYRIAV NTAKNHLVAQ GRRAPANDID AEEAEYYDGS DALKEFASPE
RLMLSDEIQK VVFDTLDTLP EELKMAISLR ELDGMSYEEI ANVMDCPVGT VRSRIFRARE
AIDKKLQPLL EQ