Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1142 |
Symbol | |
ID | 5613797 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1362918 |
End bp | 1363496 |
Gene Length | 579 bp |
Protein Length | 192 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640931991 |
Product | RNA polymerase sigma factor RpoE |
Protein accession | YP_001472881 |
Protein GI | 157374281 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000720782 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGGAC AAATAAGTGA TCAACAATTA GTTGAACGTG TACAGCAGGG AGATAAAAAC GCTTTTAACC TTTTGGTGCA GAAGTATCAA AACAAGGTCA TGAGTTTGAT TGCACGTTAC GTGCGTAATC AGGCCGACGT TGCTGATGTC GCTCAGGAAG CCTTTATAAA AGCTTACCGA GCCTTGCCCA ATTTTCGTGG TGAAAGTGCT TTTTATACCT GGTTATACCG AATTGCGGTT AACACAGCGA AGAATCATTT GGTTGCACAG GGGCGACGCG CACCTGCAAA TGATATCGAT GCAGAGGAAG CCGAATATTA TGATGGCAGC GACGCCTTAA AGGAGTTTGC ATCTCCGGAG CGTTTGATGC TGTCGGATGA GATCCAGAAG GTTGTCTTTG ACACCTTGGA CACATTGCCA GAAGAATTAA AGATGGCTAT TTCGTTGCGA GAGCTCGATG GTATGAGTTA CGAAGAGATA GCAAACGTCA TGGATTGCCC CGTCGGTACT GTAAGATCTC GGATCTTCAG GGCTCGAGAG GCGATTGATA AAAAGCTTCA GCCTTTGCTG GAGCAGTAG
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Protein sequence | MSGQISDQQL VERVQQGDKN AFNLLVQKYQ NKVMSLIARY VRNQADVADV AQEAFIKAYR ALPNFRGESA FYTWLYRIAV NTAKNHLVAQ GRRAPANDID AEEAEYYDGS DALKEFASPE RLMLSDEIQK VVFDTLDTLP EELKMAISLR ELDGMSYEEI ANVMDCPVGT VRSRIFRARE AIDKKLQPLL EQ
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