| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1141 |
|---|
| Symbol | |
|---|
| ID | 5613796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1361107 |
|---|
| End bp | 1362717 |
|---|
| Gene Length | 1611 bp |
|---|
| Protein Length | 536 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640931990 |
|---|
| Product | L-aspartate oxidase |
|---|
| Protein accession | YP_001472880 |
|---|
| Protein GI | 157374280 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0029] Aspartate oxidase |
|---|
| TIGRFAM ID | [TIGR00551] L-aspartate oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0257897 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG TAGTTGAACA CCAATCTGAC GTTTTGGTTA TCGGCAGCGG TGCTGCAGGA
CTCACTTTAG CCTTGCATCT TGCTGAAAAA TCACAAGTTA CATTACTTTC CAAGGGCCCT
CTAAGTGAAG GTTCAACTTA TTATGCCCAG GGCGGTATAG CCTCAGTCTT CGATGAAGAC
GATACCGTAG AGTCCCATGT TGCCGACACC TTGGTTGCCG GAGCCGGACT TTGTGATGAG
TCGGTGGTTA CCTTCACCGC AGAGAATGCC AAACGTTCTA TGGAGTGGCT CATACAGTGT
GGTGTGGCGT TCGATAAAGA GGAAACCCTC GACGGGGACT CGACGAATGC GCCCTATCAT
CTTACCCGCG AGGGGGGTCA TAGTCACAGA CGAATTCTTC ATGCTGCCGA TGCAACCGGT
AAGGAAGTTC AGGTCACACT ACAAGATAGA GCCAGAGCAC ATCCTAACAT CCAGGTGCTC
GAACGCTATA ATGCCATCGA CCTTATCACT TCACGCAAGC TAAACAGACC GGGAAACCGT
GTACTTGGGG CTTATATCTG GAACCGGGAT GCCGAGCAGG TCGAAACCGT TAAGGCACGT
TTTGTTGCCC TCGCCACCGG TGGCAGCTCG AAGGTTTATC AATATACATC GAACCCGGAT
ATCGCATCGG GTGATGGTAT TGCAATGGCC TGGCGTTCGG GTTGCCGTGT GGCAAACATG
GAATTCAATC AATTCCACCC TACCTGCCTT TATCACGCCG ATGCCAGAAA CTTTCTTCTT
ACCGAAGCAC TTAGGGGCGA AGGCGCCTAC CTGCGCCGCC CGGATGGCAG CCGCTTTATG
CCGGACTTCG ATGAGCGAGC CGAATTGGCA CCGAGAGATA TTGTCGCCCG CGCGATAGAT
TATGAGATGA AACGTCTGGG TTCTGATTGT GTTTATCTGG ACATCAGCCA TAAGCCTGCT
GACTTTGTTA TCAAGCACTT CCCCACGATC CATAAACGTT GCCTCGAGTT CGGTATCGAT
ATCACCACTG ACCCCATTCC TGTCGTACCG GCCGCCCACT ATACTTGTGG CGGGATCATG
ACAGACCTTC ATGGTCAAAC CGATCTCAAT GGACTCTATG CCATTGGTGA GGTGGCTTAT
ACCGGCTTAC ATGGCGCAAA CCGCCTGGCA AGTAACTCGC TATTGGAATG TTTAGTATTT
GCCAGGGCTG CCGGTGAAGA TATTGAAAGT CAGCTCCATA AAATTCCCAT GCCAGGCAGT
TTACCCGCCT GGGATGAAAG TCAGGTATCG AACTCAGATG AAGAGGTCGT CATCGCCCAT
AACTGGCACG AGCTACGCCT GTTTATGTGG GATTACGTCG GAATTGTACG TTCAGACAAA
CGTCTCGAAC GTGCCTTGAG ACGTTGCATC ATGCTGCAAC AAGAGATCCA GGAATATTAC
AGTAACTTCT GCGTCAGCAA TAACCTGTTG GAGCTAAGAA ACTTAGTTCA GGTCGCGGAG
CTGATCATTC GCTGTGCGAT GGAGAGAAAA GAGAGTCGTG GCTTGCATTA CAACATCGAC
CACCCTCAGC AAGTTGAAAA CCCGACACCG ACAATTCTAC AGCCGGATTA A
|
|---|
| Protein sequence | MKQVVEHQSD VLVIGSGAAG LTLALHLAEK SQVTLLSKGP LSEGSTYYAQ GGIASVFDED
DTVESHVADT LVAGAGLCDE SVVTFTAENA KRSMEWLIQC GVAFDKEETL DGDSTNAPYH
LTREGGHSHR RILHAADATG KEVQVTLQDR ARAHPNIQVL ERYNAIDLIT SRKLNRPGNR
VLGAYIWNRD AEQVETVKAR FVALATGGSS KVYQYTSNPD IASGDGIAMA WRSGCRVANM
EFNQFHPTCL YHADARNFLL TEALRGEGAY LRRPDGSRFM PDFDERAELA PRDIVARAID
YEMKRLGSDC VYLDISHKPA DFVIKHFPTI HKRCLEFGID ITTDPIPVVP AAHYTCGGIM
TDLHGQTDLN GLYAIGEVAY TGLHGANRLA SNSLLECLVF ARAAGEDIES QLHKIPMPGS
LPAWDESQVS NSDEEVVIAH NWHELRLFMW DYVGIVRSDK RLERALRRCI MLQQEIQEYY
SNFCVSNNLL ELRNLVQVAE LIIRCAMERK ESRGLHYNID HPQQVENPTP TILQPD
|
|---|
| |