| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1138 |
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| Symbol | nhaR |
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| ID | 5610250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1359421 |
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| End bp | 1360329 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640931987 |
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| Product | transcriptional activator NhaR |
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| Protein accession | YP_001472877 |
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| Protein GI | 157374277 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.823681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTCATC TTAACTATAA CCATCTATAT TACTTTTGGA TGGTTCATAA AAAGGGCTCG
GTGGCGAAAG CTGCCGAGGC TTTATGCTTA GCACCGCAAA CCGTGACCGG ACAGATTAGG
GTGTTAGAAA CTCGTCTGAA GGGAAGCTTA TTTAAGCGTG TAGGCCGAAC ATTGGAACCG
ACGGAGCTTG GCGAGCTGGT ATTTCGCTAT ACCGATAAGA TGTTTAGCCT AAGCTATGAG
ATGCTGGATA TTCTCAACTA TCAAAAAGAT GAGAATATTC TTTTTGAAGT CGGTATTGCC
GATGCGTTAT CGAAAGCCCT GGCGAGTCGG GTGTTACTCT CGGTGGTACC CAGTGACGGC
TCTATGCATC TTGCCTGCTT CGAGGCAACC CATGAAAGTT TGATGGAGAG GTTGCGCGCG
CATAAGTTGG ATATGATCTT ATCTGACTGT GCCGGTGAGT CGTTGAAATA CCCGGAGATA
CTGTCAAAAA AGTTAGGCGA GTGCGGTATC GCTTTCTTTT CCGCCGAACA GTACAGCAAG
CCATTTCCGG AATGTCTGGA GGAGGGGAAG TTACTTATTC CGGGTAAACG CACCTCCCTG
GGGCAACAAC TACATCACTG GTTCGATGAA AACGGTCTCA ACGTTAATAT ATTAGGTGAG
TTCGATGATG CCGCCATGAT GAAAGCCTTC GGCTATTTCA AGCAAGGTAT ATTCGTTGCG
CCTTCCATAT ATAAGCAAGA CATTCTCTCC CATGATATGC ACTTGTTAGG TGAAACAAGT
GATATCAAGG AGGTTTATCA TGTGATGTTT GCTGAGCGGA TGATCCAGCA TCCTGCGGTT
AAACGCTTGT TAGAAACCGA TTTTACCGAC CTTTTTGAGG GGAGAGATCC AAAAGTTAAA
TTACTGTAA
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| Protein sequence | MSHLNYNHLY YFWMVHKKGS VAKAAEALCL APQTVTGQIR VLETRLKGSL FKRVGRTLEP
TELGELVFRY TDKMFSLSYE MLDILNYQKD ENILFEVGIA DALSKALASR VLLSVVPSDG
SMHLACFEAT HESLMERLRA HKLDMILSDC AGESLKYPEI LSKKLGECGI AFFSAEQYSK
PFPECLEEGK LLIPGKRTSL GQQLHHWFDE NGLNVNILGE FDDAAMMKAF GYFKQGIFVA
PSIYKQDILS HDMHLLGETS DIKEVYHVMF AERMIQHPAV KRLLETDFTD LFEGRDPKVK
LL
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