| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1131 |
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| Symbol | |
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| ID | 5613766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1351390 |
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| End bp | 1352064 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640931980 |
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| Product | DNA mismatch repair protein |
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| Protein accession | YP_001472870 |
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| Protein GI | 157374270 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3066] DNA mismatch repair protein |
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| TIGRFAM ID | [TIGR02248] DNA mismatch repair endonuclease MutH |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000941126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAACGA CACCAAAACC TCCCCATAGT ATCGAAGAGC TAATGCTGCG AGCCAATAAC
ATGGCAGGCC TGACATTGGG TCAACTCGCC GACTCACACG GTTTATCTAC CCCAGTCAAT
TTGAAAAGAG ATAAAGGTTG GGTTGGCCAA CTCATCGAAC ATGAACTCGG CGCCATTGCC
GGCTCAAGGC CTGAACAGGA CTTCCTGCAT CTGGGCATCG AGCTTAAAAC GATCCCTGTC
GATAGTAAGG GAAAGCCAAT GGAAACGACC TACGTGACCG TCGCTCCCTT AGTCGACATT
CAAGGCTTAA CCTGGGAAAA CAGCGTGGTG TGCCATAAAC TCCAAACTGT TCTTTGGGTG
CCGGTACAAG GTGAAAGGCA GATACCTGTG GCTGACAGGC AAATTGGAAC ACCGATACTC
TGGACACCGA ACTCAGATGA GATCGCACTT TTAAAGCAGG ACTGGGAAGA GATAATGGAA
TTTATCTCGC TGGGGCAAGT TCAACAGCTG ACCGCAAGAC ATGGAGAAGT GCTTCAACTT
AGACCTAAGG GAGCAAACAG TCGCTCCGTC ACACAAAGTA TTGCTAAGGA TGGCTCTACG
ACTATGACCA ATCCAAGGGG GTTCTATCTG AAAACCCAGT TTACACAGGC TATTCTCGCG
CGTTTTTTTG GTTAA
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| Protein sequence | MKTTPKPPHS IEELMLRANN MAGLTLGQLA DSHGLSTPVN LKRDKGWVGQ LIEHELGAIA
GSRPEQDFLH LGIELKTIPV DSKGKPMETT YVTVAPLVDI QGLTWENSVV CHKLQTVLWV
PVQGERQIPV ADRQIGTPIL WTPNSDEIAL LKQDWEEIME FISLGQVQQL TARHGEVLQL
RPKGANSRSV TQSIAKDGST TMTNPRGFYL KTQFTQAILA RFFG
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