| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1126 |
|---|
| Symbol | gltB |
|---|
| ID | 5612653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1342273 |
|---|
| End bp | 1346721 |
|---|
| Gene Length | 4449 bp |
|---|
| Protein Length | 1482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640931975 |
|---|
| Product | glutamate synthase subunit alpha |
|---|
| Protein accession | YP_001472865 |
|---|
| Protein GI | 157374265 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0069] Glutamate synthase domain 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.052618 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTAT ATCACCCCAG TTTCGAGCGG GATAATTGCG GTTTTGGTCT GATAGCCCAA
ATGGACGGTG AACCAAGCCA TCGAATAGTA AGAACAGCAA TACATGGCCT GGATCGCATG
AAGCATCGTG GTGGCATCGC CGCCGATGGG CGTACGGGTG ACGGCTGCGG TCTGCTTATG
CAACTTCCGA TAAAATTCTT CGAAGCCATT GCAGCCGAAA ACGATTGGCA CCTGAGCCGT
AAATTTGCTG TCGGTATGTT TTTCCTCAGC CAGGATGAGC AACTCGCCAA TGAAGCTAAA
CTCTTATTAG AACGAGAATT AGAAAAAGAG ACCCTAAGCG TTGCAGGATG GAGAAAGGTA
CCCGTTAATC CCGATGTACT TGGACCGATA GGAAAGAAGA GTCAGCCACA GATTTTTCAG
GTACTCATTA ATGCTCCCAT TGGCTGGCGA GAGAAAGATC TCGAACGTCG CCTCTATATG
GCCAGACGCC GTTTAGAGCA ACAACTGCCC CATGATAAAG ATTTTTATGT TGCCAGCTTA
TCTGGACAGG TCATTGTCTA TAAAGGCTTA ATGATGCCTG TCGACCTCCC CGAATTCTAT
CTGGATCTTG CCGATATCAG GCTCCAGAGC TCTATCTGTC TTTTCCATCA AAGATTTTCT
ACCAATACAT CACCTAAGTG GCCACTGGCA CAACCCTTCA GATATCTGGC CCATAATGGT
GAGATAAACA CAATTACAGG TAACAGACAG TGGGCACGTG CTCGTGCATA TAAGTTTAAC
GCCCCTCTAC TGCCCGATCT GCAGCAAGCC GCTCCTTTCG TAAACGAAAC TGGCTCCGAC
TCCTCATCAC TCGATAACAT GCTTGAGATG CTGTTGGCCG GCGGCATGGA TCTATATCGA
GCCATGCGCC TGTTAATACC ACCAGCATGG CAGAGTAATC CGGAGATGGA TGAAGAGCTC
AAAGCCTTCT ACGATTTCAA CTCCATGCAT ATGGAGCCTT GGGACGGACC CGCCGGCATC
GTGATGACAA ACGGCAGGCA TGCGGCCTGC GCTGTCGATC GAAATGGTTT GCGCCCATCG
CGCTATGTGA TCACCAAAGA CAGAATACTC ACCCTGGCCT CCGAAGTGGG GATCTGGGAT
TATGCCCCCG ATGAAGTCGT TGAGAAGGGT CGTGTTGGCC CCGGTGAGCT TCTGGTACTC
GACACCCTGA ACGGTCAGCT CTACTCTTCG TTTGAGATTG ATAACGATCT CAAGCGCCGT
CACCCATACA AAGAGTGGAT GGCCAAAAAT AGCCGGACGT TAACCCCGGC CGAAGAGATG
CCTAATGAGG AGCAGGGAGT ATGTGAATTC ACCGACGCTC AACTGCTGCA ATATCAGAAG
CATTTCGGTT ACTCACGTGA AGAGCTCGAG CAAGTTATCT GGGTTCTCGC TCAAAAAGGT
GAAGAGGCGA CAGGCTCCAT GGGTGACGAC ACCCCTATGG CCGTGCTGTC TAAGAAGTCC
CGTACCATCT ATGACTATTT CAGACAGAAA TTTGCCCAGG TCACTAATCC GCCTATCGAT
CCACTCAGAG AGAAACATGT AATGTCTCTC TCGACCTGTG TCGGGCGCGA GCAGAATCTA
TTCAATGAGA CTACGGGTCA TGCATATCGG GTTATGTTTA ACTCGCCGGT ATTGCTTTTT
AGCGACTTCA ACCAGTTAAT GGCACTGGAC TCGACCTACT ATCGAGCAAA TACAGTAGAT
CTTAACTACG ACTTAGACGA AGGGCTTGAA AATGCGGTTA AACGCATCTG TGATGAAGCG
GAAAGACTAG CCCGCACAGG CACGACTCTA CTGATATTAT CAGACAGAGC CACGGCAGAT
TCTAAGCAAG TAGTCCCTGC GGCCATGGCC GTTGGTGCGG TTCAACATGT TCTGGTCAAT
AAGAGCCTGC GCTGCGACAC CAACATCATA GTAGAAACGG CTTCGGCTCG TGACCCTCAT
CATTTTGCTG TGTTATTAGG CTTCGGCGCC ACGGCGGTCT ACCCCTATTT GGCCTATGAG
TCCATCTCGG CTCTCGCTAA ACTCAATAAT GTCTCACAAA CGAGTCATCT ATTGCTCAAC
TTCCGCCATG GTATCGACAA GGGCCTGAGA AAGATCATGT CTAAGATGGG GATCAGCACT
GTCGGCTCCT ATCGATGCTG TCAACAATTT GAGGCTATCG GTCTGGCGTC GAATGTGGTC
GATTTGTGCT TCAATGGCGT AGTAAGCCGT ATCGAAGGTG CGAGCTTTGA ACTACTCGAA
CAAGATCAGG TACTGCTTCA TAAGCACGCA TTCAGGGCGC ATCAACCATT GAGCCAGGGT
GGTTTACTGA AATATGTTGA GGGTGGTGAA TACCACTGCT TTAATCCTGA TGTCGTCAAC
ACCCTGCAAG CTTGTCTGAA AGAGAGAGAT TATCCGGCCT ATAAACGATT TACCGAGCTG
GTCGATAACA GACCCGTTGC GACACTACGA GATCTCATCG AGATAAATGG GAAATTGGAC
GCGGTTGAGC TTGATACCGT CGAGTCAGCC GATACGCTCT ATCCCAGATT CGATAGCGCA
GCCATGAGTA TTGGTGCACT GAGCCCCGAA GCCCATGAAG CCCTGGCTGT AGCCATGAAC
CGCCTGGGAG GCCGCTCCAA TTCAGGCGAA GGCGGAGAAG ACCCGGCCCG TTTCAACTCA
GAACGAAACT CAGCAATTAA ACAAATCGCA TCAGGCAGAT TCGGCGTTAC CGCTCACTAT
CTGATGAACG CCGAAGTTCT GCAGATTAAG GTGGCACAAG GCGCTAAGCC TGGAGAGGGC
GGACAACTTC CCGGACATAA GGTCAGCGTT GAAATTGCAG CGCTGCGTAA TGCCCGTCCC
GGAGTCACGC TGATTTCGCC GCCTCCACAT CATGATATCT ATTCGATTGA AGATCTGGCG
CAGCTTATCT TCGATCTCAA ACAGATTAAC CCCAAGGCAC TCATCTCGGT CAAACTGGTA
TCTGAACCGG GGGTCGGCAC CATAGCAACC GGTGTAGCCA AGGCTTATGC CGATATGATT
ACCATCTCAG GTTATGATGG TGGTACAGGT GCCAGCCCGA TTACATCGGT TAAATATGCC
GGTAGCCCGT GGGAGCTGGG CCTTGCAGAG GTTCATCAAT CTCTGGTTAA AAATGGCCTT
CGCCATAAGA TCCGACTTCA GGTCGATGGC GGATTAAAAA CCGGTCAAGA CGTGATCAAG
GCTGCGCTGT TAGGAGCGGA AAGCTTTGGT TTCGGTACGG TTCCGATGAT AGCGCTGGGT
TGTAAGTACC TGCGAATTTG TCACCTGAAC AACTGTGCAA CCGGTGTGGC AACTCAAAAT
GAAAAGCTTA GAAATGAGCA CTATCATGGT CTGCCCGAGC GCGTCATGAC CTACTTCGAG
TTCGTTGCCG AAGAGATCAG AGAGTGGATG GCCGCACTGG GTGTGACACA ATTTGAAGAT
CTCGTGGGTC GAAGCGAATG GTTAGCGGCA CTCGATGGCG ATACCCTTAA ACAACAGGGA
CTGGATCTCA GCCCGATCTT ATACACTCCG AAAATCCGAG AGGGTTCGGC TCGTACCTGG
CAGGAGATAA ACCCGCCATC GGATCCTGGC AAATTAAACA TCAAGATCCT TGAAAAAACC
AGAGAGGCTG TAGAACAGGG GCTCTCTATT GATGCAAGGT TTGATATCAA CAACACTGAC
CGCTCGGTTG GCGCAGCACT TTCAGGCTTT ATCGCGAAAA CAGTGGGCAA GGAGGGTGCT
AAGGCTCCCA TCAAGCTGAA GTTTAATGGG AGCGCCGGAC AAAGCTTCGG TGTATGGAAC
AGCCCCGGCC TCGAGCTTAC CCTCTGTGGT GATGGCAACG ACTATGTCGG TAAAGGCATG
TCTGGCGGTA AGATCACCAT CCATCCTCCA TTGGGCAGCA CCTTCCAGAG CGAACGCTCC
TCCATTATCG GCAATACCTG CCTCTACGGA GCATCGGGCG GTAAGATGTT CGCAGCCGGC
ATCGCCGGTG AACGCTTCGG AGTAAGAAAC TCGGGAGCAA CAGCAGTTGT TGAAGGACTC
GGCGACAACG GTTGTGAATA TATGACCGGT GGTATTGTCC TCGTTCTGGG TAAAACCGGC
GTTAACTTTG GTGCAGGTAT GACTGGTGGT TTTGCCTATG TGTTTGACCG ATTCGGACGA
TTCAATCGCC GGGTCAATAC TGAACTGGTG GATACTCAGA AGTTAGAGTC CCCCATACAT
CAGCAGCACC TGAAAGCCTT GATCGAGGAG CATGTTGCCG AAACCGGCAG TGAACACGCC
AAGATGCTGT TAACCGATTT TGAATATTGG CTCGACTGCT TCGTATTGGT CAAACCTAAA
AGCGTTCCAG TCTCAGATCT ACTAAGGCTC GAGCAATCAC AACCTGAACT CAAAGTGATA
GCGGGGTAA
|
|---|
| Protein sequence | MSLYHPSFER DNCGFGLIAQ MDGEPSHRIV RTAIHGLDRM KHRGGIAADG RTGDGCGLLM
QLPIKFFEAI AAENDWHLSR KFAVGMFFLS QDEQLANEAK LLLERELEKE TLSVAGWRKV
PVNPDVLGPI GKKSQPQIFQ VLINAPIGWR EKDLERRLYM ARRRLEQQLP HDKDFYVASL
SGQVIVYKGL MMPVDLPEFY LDLADIRLQS SICLFHQRFS TNTSPKWPLA QPFRYLAHNG
EINTITGNRQ WARARAYKFN APLLPDLQQA APFVNETGSD SSSLDNMLEM LLAGGMDLYR
AMRLLIPPAW QSNPEMDEEL KAFYDFNSMH MEPWDGPAGI VMTNGRHAAC AVDRNGLRPS
RYVITKDRIL TLASEVGIWD YAPDEVVEKG RVGPGELLVL DTLNGQLYSS FEIDNDLKRR
HPYKEWMAKN SRTLTPAEEM PNEEQGVCEF TDAQLLQYQK HFGYSREELE QVIWVLAQKG
EEATGSMGDD TPMAVLSKKS RTIYDYFRQK FAQVTNPPID PLREKHVMSL STCVGREQNL
FNETTGHAYR VMFNSPVLLF SDFNQLMALD STYYRANTVD LNYDLDEGLE NAVKRICDEA
ERLARTGTTL LILSDRATAD SKQVVPAAMA VGAVQHVLVN KSLRCDTNII VETASARDPH
HFAVLLGFGA TAVYPYLAYE SISALAKLNN VSQTSHLLLN FRHGIDKGLR KIMSKMGIST
VGSYRCCQQF EAIGLASNVV DLCFNGVVSR IEGASFELLE QDQVLLHKHA FRAHQPLSQG
GLLKYVEGGE YHCFNPDVVN TLQACLKERD YPAYKRFTEL VDNRPVATLR DLIEINGKLD
AVELDTVESA DTLYPRFDSA AMSIGALSPE AHEALAVAMN RLGGRSNSGE GGEDPARFNS
ERNSAIKQIA SGRFGVTAHY LMNAEVLQIK VAQGAKPGEG GQLPGHKVSV EIAALRNARP
GVTLISPPPH HDIYSIEDLA QLIFDLKQIN PKALISVKLV SEPGVGTIAT GVAKAYADMI
TISGYDGGTG ASPITSVKYA GSPWELGLAE VHQSLVKNGL RHKIRLQVDG GLKTGQDVIK
AALLGAESFG FGTVPMIALG CKYLRICHLN NCATGVATQN EKLRNEHYHG LPERVMTYFE
FVAEEIREWM AALGVTQFED LVGRSEWLAA LDGDTLKQQG LDLSPILYTP KIREGSARTW
QEINPPSDPG KLNIKILEKT REAVEQGLSI DARFDINNTD RSVGAALSGF IAKTVGKEGA
KAPIKLKFNG SAGQSFGVWN SPGLELTLCG DGNDYVGKGM SGGKITIHPP LGSTFQSERS
SIIGNTCLYG ASGGKMFAAG IAGERFGVRN SGATAVVEGL GDNGCEYMTG GIVLVLGKTG
VNFGAGMTGG FAYVFDRFGR FNRRVNTELV DTQKLESPIH QQHLKALIEE HVAETGSEHA
KMLLTDFEYW LDCFVLVKPK SVPVSDLLRL EQSQPELKVI AG
|
|---|
| |