| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1125 |
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| Symbol | gltD |
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| ID | 5612652 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1340857 |
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| End bp | 1342266 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931974 |
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| Product | glutamate synthase subunit beta |
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| Protein accession | YP_001472864 |
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| Protein GI | 157374264 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAATG ATTTTCAATT TATAGAAGTC GGTCGTAAAG ATCCTGTTAA GCACCCTGCG
AAGAAGCGTG CCACGCAGTT TATTGAAATA TACCAGCCCT TTGCTCAGAC TCAAGTGAAT
GAACAAGCGG ACCGTTGTTT AGATTGTGGT AACCCGTACT GTGAGTGGAA GTGTCCACTA
CATAACTACA TACCAAACTG GTTAAAACTC GCCCAACAGG GTCGCATCTT AGAGGCTGCG
GACCTGGTAC ATGAAACTAA CACCCTGCCG GAGATCTGTG GCCGCGTGTG TCCTCAGGAC
CGCCTCTGCG AAGGCGCCTG TACCCTGAAC GATGAATTTG GTGCTGTCAC CATAGGTAAC
GTCGAGAAAT ATATTACCGA TACCGCCATC GCCCAGGGGT GGAAACCAGA CCTAAGCCAA
GTTACACCGA GAAAAGAGCG TGTCGCTATT GTTGGAGCCG GCCCCGCGGG ACTTGGCTGC
GCCGACATAT TAGCGCGCAA CGGTGTCAGC GCAGTCGTGT TCGATAAAAA TCCGCAGATA
GGTGGACTGC TTACCTATGG CATTCCCTCA TTTAAGCTCG ACAAGTCGGT GATGGCGACC
CGTCGGAGCG TCCTCGAAGG GATGGGAATA GAGTTCAAAT TAGGTAGCGC GATAGGTAAA
GATCTCCCAT TCGATGACTT ACTTAATGAG TACGATGCCG TCTTCCTCGG CATGGGGACT
TATACCGCAA TGAAGGCCCG ATTACCCGGC GAAGACGCTC AAGGTGTCTA TCAGGCCCTG
CCCTACCTCA TCGGTAATAC TCACCACATC ATGGGGACTA CAGATGAAGA GTCCCCCTAT
CTCAACCTTA AAGGTAAGAA GGTCGTGGTC CTCGGGGGTG GTGACACCGC CATGGATTGT
GTTCGCACCG CCATACGTCA AGGTGCTAAA GAGGTCACTT GTGCCTACCG CCGCGACGAA
GAGAACATGC CCGGTTCACG CCGTGAAGTA CAAAATGCGA AAGAGGAAGG TGTTCAGTTT
CTATTTAACA GACAGCCTGT CGCAATTAAG ACTCAAGACG GTCAAGTTAG TGGCATACAG
TGCGTAGAAA CACAGATGGG CGCCGCCGAC GATAGCGGAC GTCGCCGTGC TGAGGTTATC
GAGGGCAGCG AAGCCCTGCT CGATGCCGAC GCCATCATAA TCGCATTCGG CTTCCAACCC
AGCCCGGCAG ATTGGCTTAA AGACCATAAT GTCGACCTGG ATGAGTGGGG ACGCGTTATT
GCACCTAAAG CGAGTGATAA CCCATTTCAA ACCACCAATC CAAAGGTTTT TGCCGGCGGC
GACATGGTAA GAGGTTCAGA TCTCGTGGTT ACCGCCATCG CCGAAGGACG CGATGCCGCA
CTGGGCATAC TCAACTATTT CGAAGATTAG
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| Protein sequence | MSNDFQFIEV GRKDPVKHPA KKRATQFIEI YQPFAQTQVN EQADRCLDCG NPYCEWKCPL
HNYIPNWLKL AQQGRILEAA DLVHETNTLP EICGRVCPQD RLCEGACTLN DEFGAVTIGN
VEKYITDTAI AQGWKPDLSQ VTPRKERVAI VGAGPAGLGC ADILARNGVS AVVFDKNPQI
GGLLTYGIPS FKLDKSVMAT RRSVLEGMGI EFKLGSAIGK DLPFDDLLNE YDAVFLGMGT
YTAMKARLPG EDAQGVYQAL PYLIGNTHHI MGTTDEESPY LNLKGKKVVV LGGGDTAMDC
VRTAIRQGAK EVTCAYRRDE ENMPGSRREV QNAKEEGVQF LFNRQPVAIK TQDGQVSGIQ
CVETQMGAAD DSGRRRAEVI EGSEALLDAD AIIIAFGFQP SPADWLKDHN VDLDEWGRVI
APKASDNPFQ TTNPKVFAGG DMVRGSDLVV TAIAEGRDAA LGILNYFED
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