| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1119 |
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| Symbol | |
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| ID | 5611607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1332689 |
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| End bp | 1334383 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640931968 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001472858 |
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| Protein GI | 157374258 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAT CAACAACAGA AAAGTACGAC TATATTATCG TTGGTGCAGG TAGTGCAGGC
TGCGTGTTAG CCAACCGTTT ATCGGCTGAC GCAAATAACA GCGTATTACT GATTGAAACC
GGCGGCAGCG ACAGGAGCAT CTTTATTCAG ATGCCAACGG CCCTGTCTAT TCCCATGAAT
ACCCCAAAAT ATGCGTGGCA GTTTGAGACC GAAGCCGAGC CTCACTTGGA CAATCGCCGC
ATGCACTGCC CTCGTGGCAA GGTGCTGGGT GGCTCCTCAT CGATCAATGG CATGGTCTAT
GTCCGCGGGC ATGCCCGAGA TTTTGACGAG TGGCAACAAG AAGGTGCTAA AGATTGGGAT
TATGCCCATT GCCTACCCTA CTTCAAAAAA GCGGAAAGCT GGGCGTTTGG TGAAGATGAT
TATCGCGGTG TTGATGGCCC ACTAGCCGTC AACAACGGCA ACGAAATGAA AAACCCGTTA
TACCAAGCCT TTGTCGATGC GGGTGTCGAT GCCGGGTATA TGGCGACCAG TGATTATAAC
GGCGCGCAGC AAGAGGGCTT TGGCCCTATG CACATGACCA TTAAAAATGG CGTGCGTTGG
TCAACATCTA ACGCCTATCT AAGACCGGCC ATGAAGCGTG AAAACCTCAC CGTCATCACC
CATGCCCAGG TACATAAGGT GTTGTTTGAA GGCAAACAAA CCGTAGGTGT TCGTTTCGAA
CGCAAGGGCA AGATGACAGA TGTGCATTGC AGCAAGGAAG TGGTGTTATC GGCAGGCTCT
ATCGGCTCGC CGCATATACT GCAACTTTCG GGTATTGGCG CCGCAGAGAC ACTTGCCAAG
GCTGGCATCG AACAGGTACA TGAGTTGCCG GGTGTGGGTG AGAACCTGCA GGACCATCTC
GAGTTCTACT TTCAATTTAA GTGCCTTAAG CCCATTTCGC TCAATGGCAA GATCGACCCG
TTAAACAAAC TCTTTATCGG CACTCGCTGG ATCTTGAACA GAACAGGCCT GGGGGCGACA
AACCATTTCG AATCTTGTGG GTTTATTCGC TCTAAAGCGG GACTGGAGTG GCCGGATCTG
CAATATCATT TCTTGCCTGC CGCCATGCGC TACGACGGAA AAGAGGCCTT CGCGGGTCAC
GGCTTCCAGG TCCATATAGG ACACAACAAA CCAAAGAGTC GCGGCGCGGT GAAAGTGGTA
TCGAGCGATG CCCGTGTTGC CCCGAGTATT CAGTTTAACT ATCTATCCCA TAAGGATGAT
ATAGAAGGCT TTCGCGCCTG CGTTCGGTTA ACCCGGGAGA TCATCAATCA GCCGGCATTG
GATGAATACC GAGGCGAGGA GATACAGCCC GGGACTTCGG TTCAAACCGA TGAAGAGATC
GATACCTTCG TCAGAAGCTC GGTCGAGAGC GCCTATCACC CCTCTTGTTC GTGCAAGATG
GGAGAAGATG CGATGGCGGT GGTGGACTCA GAAACTAAGG TGCATGGTAT TCAAGGACTT
AGAGTGGTTG ATTCCTCTAT TTTCCCCACC ATACCTAACG GCAACCTTAA CTCGCCGACC
ATAATGGTGG CGGAGCGCGC AGCCGATATC ATCTTGGGCA TGACGCCATT GCCGGCCAGC
AGTGCGACAG TGACCTTTGC TCAGCAATGG CAGCAAAAAC AGCGGTTACG CGCACCAAAA
AGACAACTCG CCTGA
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| Protein sequence | MTQSTTEKYD YIIVGAGSAG CVLANRLSAD ANNSVLLIET GGSDRSIFIQ MPTALSIPMN
TPKYAWQFET EAEPHLDNRR MHCPRGKVLG GSSSINGMVY VRGHARDFDE WQQEGAKDWD
YAHCLPYFKK AESWAFGEDD YRGVDGPLAV NNGNEMKNPL YQAFVDAGVD AGYMATSDYN
GAQQEGFGPM HMTIKNGVRW STSNAYLRPA MKRENLTVIT HAQVHKVLFE GKQTVGVRFE
RKGKMTDVHC SKEVVLSAGS IGSPHILQLS GIGAAETLAK AGIEQVHELP GVGENLQDHL
EFYFQFKCLK PISLNGKIDP LNKLFIGTRW ILNRTGLGAT NHFESCGFIR SKAGLEWPDL
QYHFLPAAMR YDGKEAFAGH GFQVHIGHNK PKSRGAVKVV SSDARVAPSI QFNYLSHKDD
IEGFRACVRL TREIINQPAL DEYRGEEIQP GTSVQTDEEI DTFVRSSVES AYHPSCSCKM
GEDAMAVVDS ETKVHGIQGL RVVDSSIFPT IPNGNLNSPT IMVAERAADI ILGMTPLPAS
SATVTFAQQW QQKQRLRAPK RQLA
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