| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1117 |
|---|
| Symbol | |
|---|
| ID | 5611597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1330518 |
|---|
| End bp | 1331222 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640931966 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001472856 |
|---|
| Protein GI | 157374256 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02001] conserved hypothetical protein, proteobacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAA CGATTAAAAA TCTTGCGCTA CTTGGCCTAA TCGCTTTACC GACAACGGCA
ATTGCCGGGG TTAGTTCAAC CGTCACCGCA GTCTCTGATT ATACCTTCAA CGGTGTAAGC
CAGACAGACA ATAGTCCGGC AATACAGGCC AGTCTCGATT ATGCTTCAGA TGCTGGCTGG
TATGTGGGAA GTTGGGCATC AAACGTCGAT TTCGGTTCGG GTGATGATAC CTGGCTGGAG
CTGGATTTTT ACGCCGGTCA CTTCCTCCAA CTCTCGGAGC GAGTGTCACT GGATGCCGGT
ATCGCTTATT ACACCTACCA TGGCGACTCC TTCTCGGATG AGTACCAATA TCCGGAGCTG
TATACCAAGT TTGGCTATGC ATCGTCTGTT GGGCAGAGTG AACTGAACTT CTGGTACACC
TGGGATTACT TTGGCGTCGA TACGGGCCAT TACATCATGA TGGCTGCACA CACCTTTAGT
GTCGCCGAAG GTCATGATAT TCGTGTCAGT TTCGACCGCT CGACATCGCT CGATGAAGAC
AAGTGGGCAT GGGATGGCGA TAAGGCCTAT AACCATTACC GCGCCGAGTA TATGACAAGC
TGGAAAGGCT TCGATTTTAA TCTCGCCGTG GAAGATACCA GCATGGATAC CGATGCCAGC
GATACCCGAG CGGTATTGTC TGTGGCGCGC ACCTTTGCTT TTTAA
|
|---|
| Protein sequence | MKTTIKNLAL LGLIALPTTA IAGVSSTVTA VSDYTFNGVS QTDNSPAIQA SLDYASDAGW
YVGSWASNVD FGSGDDTWLE LDFYAGHFLQ LSERVSLDAG IAYYTYHGDS FSDEYQYPEL
YTKFGYASSV GQSELNFWYT WDYFGVDTGH YIMMAAHTFS VAEGHDIRVS FDRSTSLDED
KWAWDGDKAY NHYRAEYMTS WKGFDFNLAV EDTSMDTDAS DTRAVLSVAR TFAF
|
|---|
| |