| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1116 |
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| Symbol | |
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| ID | 5611596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1329077 |
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| End bp | 1330384 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640931965 |
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| Product | hypothetical protein |
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| Protein accession | YP_001472855 |
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| Protein GI | 157374255 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGTATTC GCTTAAAGCT ATCACTATTA CTGGGCTTAC TTTTTTTAGC TGCAGTCTTC
AACTCTGTAT TTACTTTCCA GCTAGAGAGT TATGGCGAGG AGAAACTGAA GTGGGTGATC
CATACACACG AAGTACTCAA TGAAACACAT ATATTATCTG GTGCGATGAA AGATGCTGAA
ACCGGCCAAC GAGGATATTT GCTGACAACT AACTCTGCTT ACTTAGAGCC TTACCATAAT
GGCGTTCTTA GCGCTCAGCA GAGCTTTGTT AAGTTAAAAG CGCTCACCTC AGATAACCCC
GGTCAGCAGG ATATTTTGAA TTCAATCGAA AAGAAAATGC AGCTTAAGTT TCAGGAGATG
GAGGAGACGA TTGAGTTGGT TCAGGGCGTT AATAATGAGG CAGCCATTGA GATCGTGAGT
GATAACCGGG GTAAGCAATA TATGGACGAT ATCAGAGCCC TCTTCAGTTC GTTTATCAAT
GCAGAAACGG TTTTATTAGA GCAGAGAAAA GGAGATTTCA GAGAGAACAG GGCACAGATA
ACCACTCTTA TCGTCGTTGA GATTGTCCTG TTTATTGGTC TGTTCATCAT GACGGTTTCC
TTCTTGCGGC GCAGTTTCTT CACTCCTCTG GAACTGCTAC TTTCCAGCGT AAAGAAATTA
GAGAAGGGGC ATAAACTGGA AGTGAGCGAC GTAGTTAAAA ACGATGAGAT GGGGCATTTA
CTCTCAACCT TCTTCGTAAT GAGCGAAAAG GTCTATCAAA GAGAGGAAGA TCTCGGTTTC
AAGGCTCACC ATGACGAGTT AACCGGACTA AAGAACCGAC TAACTATGCC CCAGGAGATA
GAGACTGCGA TCGATGAATT ACAGGAGTCC GGAGGTATGA TTGCCGTCCT GTTCATCGAT
CTCGATCGAT TTAAGCAGAT CAATGACCAG CATGGACACC ATGTTGGTGA TTTAGTGATT
AAAGAAACTG CTTATCGTAT TAAGTATGCT GTACGCGATA GCGATACGGT ATTTCGGGTG
GGAGGCGATG AGTTTTTGGC TATCGTAAAA GATATCAAAA ATATTACCGA TGTACATAAT
GTGGTCAATA ACATTGTTAG TGAGTTTAAG CATCCGGCGA GTATAGAGGG GAAGGAGGTA
GATATATCAA TCAGTGTCGG TGTTTCGGTC TCTCCTGAGG ACTCTGTGGA TAGGAAAGAG
ATAGTACAAT TTGCCGATAT TGCCATGTAT GCGGCCAAGC AGGATAAGGC TGCTTGTTAC
AGGATGTTCG ATAAAGGGAT GCTAAGACGT GGGAGCGATT CCGAATAA
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| Protein sequence | MSIRLKLSLL LGLLFLAAVF NSVFTFQLES YGEEKLKWVI HTHEVLNETH ILSGAMKDAE
TGQRGYLLTT NSAYLEPYHN GVLSAQQSFV KLKALTSDNP GQQDILNSIE KKMQLKFQEM
EETIELVQGV NNEAAIEIVS DNRGKQYMDD IRALFSSFIN AETVLLEQRK GDFRENRAQI
TTLIVVEIVL FIGLFIMTVS FLRRSFFTPL ELLLSSVKKL EKGHKLEVSD VVKNDEMGHL
LSTFFVMSEK VYQREEDLGF KAHHDELTGL KNRLTMPQEI ETAIDELQES GGMIAVLFID
LDRFKQINDQ HGHHVGDLVI KETAYRIKYA VRDSDTVFRV GGDEFLAIVK DIKNITDVHN
VVNNIVSEFK HPASIEGKEV DISISVGVSV SPEDSVDRKE IVQFADIAMY AAKQDKAACY
RMFDKGMLRR GSDSE
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