Gene Ssed_1106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_1106 
Symbol 
ID5612151 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp1317485 
End bp1319014 
Gene Length1530 bp 
Protein Length509 aa 
Translation table11 
GC content49% 
IMG OID640931955 
Producthypothetical protein 
Protein accessionYP_001472845 
Protein GI157374245 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3420] Nitrous oxidase accessory protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.875896 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCCG GAAAAATTAT AACCACAATT CTGATAGTTG CAGCCTTTAC TGGCGGTGCC 
TATTACGGCG GAAACAGCAG TGCGCCAACC ATAACAGACA GCAAGGGTGG AGCAAGCTAT
GGCGGAGGTT ATGACCGCAG TGCCGATAGC GATGCCAGCT CATCGACTCA AGTGGGTAAA
AAAAGCGCCG CCGCTAAACG AACCAAACAG GGGAAAACCC ATGTGATCGA TGATGGCGAC
AGCATCATGG AGGCGGTAAA GCTGGCCAAG CCGGGCGATA CGATTCAGAT CATGCCAGGC
ACCTACCATG AAACCGTCTA TATCGATAAA GACGACATCC ATATCATAGG CGTAATTAAG
GAGGGGCAAC GCGCCACCTT AGACGGTCAA AATAAGTTAA ATGACGCCAT CCTCTATTCC
GGCAACAACG TGATCGTTGA GAACCTGACC ATAACCCGCT ACAAGGGCAA CGGCATCATG
GGGCAAGCGG GTAACAACTT CGAGATCCGC AATAACATCA TTGTCGATAC CGGCGTCTAT
GGGATTTTCC CTCAGCTGGG TAAGAACGGT ATCGTCGAAT ACAATGTGAT CTCCGGTATC
GAAGATGCAG CCATCTATGT CGGCATGAGT GACAACATCC ATGTGGCCTA TAACGATGTG
TTCGACAGCG TCGCCGGCAT CGAGATCGAA AATTCACGCC ATAGCATAGT CGAAAATAAC
TTTGTCCATA ACAATACCGG CGGGATCTTA GCCTTTATCA CGCCGGGGCT TCCCATCAAG
ACCACCACAG ATGTGATCAT TCGTAATAAC TTTATCACGG GAAATAATCA TAAAAACTTC
GGTGCCCCCG GCTCAACCGT TGGCGGGATC CCGGCGGGTA CAGGGATCTT AGTTATGGCT
GCGGACGAGG TGGTCATAGA GGGAAATATT ATCTCAGATA ATAAGACTGC GGGGATCTTA
ATCACAGATC ACCATAACGC ACCCAATGTC ACCATCGACC CTGAGTCCGA TCCAAATCCG
GATAACATTA TGATCTTAGA CAATATGATG ATCAACAATG GTTATGACAC CATAGATGAG
GTCAAGGCAT TGATGTTGAC TGAGTTTAAA CAGGGCAACG CCGATATCGT TCGGGTTGGT
AACAGCAGCA GTAGCTGTAT CATCAACCGC CACCGCTACA CGACAGTTGG CGTTAGCAGT
TGGGATGAAT GTAGCTTCAC CCACACCTCA GGCATTGACA GCTATCTTTT GGATGAGCCG
GTCCCCCCTC GTAACATTGA CCCATCCGAA CGTGGGAAAG TGGTCTACAT GGGAATTTGT
GCAGGCTGTC ATACCTATAC AGGCAGGATG ATCGGCCCAC CGGTACAGAT CATTCAGGCG
TTATATATGG ATAATCCTCA GGGAATCGCC GACTTTATCG CCCACCCGAT TAAGAAACGA
GAGGACTATC CTGAAATGCC GCCTCAGGAC TACCTTGATG CAGAGACTCG TCTCGCTGCC
GCTAAATATA TGCTAAGCCG TAAGGGATAA
 
Protein sequence
MKSGKIITTI LIVAAFTGGA YYGGNSSAPT ITDSKGGASY GGGYDRSADS DASSSTQVGK 
KSAAAKRTKQ GKTHVIDDGD SIMEAVKLAK PGDTIQIMPG TYHETVYIDK DDIHIIGVIK
EGQRATLDGQ NKLNDAILYS GNNVIVENLT ITRYKGNGIM GQAGNNFEIR NNIIVDTGVY
GIFPQLGKNG IVEYNVISGI EDAAIYVGMS DNIHVAYNDV FDSVAGIEIE NSRHSIVENN
FVHNNTGGIL AFITPGLPIK TTTDVIIRNN FITGNNHKNF GAPGSTVGGI PAGTGILVMA
ADEVVIEGNI ISDNKTAGIL ITDHHNAPNV TIDPESDPNP DNIMILDNMM INNGYDTIDE
VKALMLTEFK QGNADIVRVG NSSSSCIINR HRYTTVGVSS WDECSFTHTS GIDSYLLDEP
VPPRNIDPSE RGKVVYMGIC AGCHTYTGRM IGPPVQIIQA LYMDNPQGIA DFIAHPIKKR
EDYPEMPPQD YLDAETRLAA AKYMLSRKG