Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1106 |
Symbol | |
ID | 5612151 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1317485 |
End bp | 1319014 |
Gene Length | 1530 bp |
Protein Length | 509 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931955 |
Product | hypothetical protein |
Protein accession | YP_001472845 |
Protein GI | 157374245 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3420] Nitrous oxidase accessory protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.875896 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCCG GAAAAATTAT AACCACAATT CTGATAGTTG CAGCCTTTAC TGGCGGTGCC TATTACGGCG GAAACAGCAG TGCGCCAACC ATAACAGACA GCAAGGGTGG AGCAAGCTAT GGCGGAGGTT ATGACCGCAG TGCCGATAGC GATGCCAGCT CATCGACTCA AGTGGGTAAA AAAAGCGCCG CCGCTAAACG AACCAAACAG GGGAAAACCC ATGTGATCGA TGATGGCGAC AGCATCATGG AGGCGGTAAA GCTGGCCAAG CCGGGCGATA CGATTCAGAT CATGCCAGGC ACCTACCATG AAACCGTCTA TATCGATAAA GACGACATCC ATATCATAGG CGTAATTAAG GAGGGGCAAC GCGCCACCTT AGACGGTCAA AATAAGTTAA ATGACGCCAT CCTCTATTCC GGCAACAACG TGATCGTTGA GAACCTGACC ATAACCCGCT ACAAGGGCAA CGGCATCATG GGGCAAGCGG GTAACAACTT CGAGATCCGC AATAACATCA TTGTCGATAC CGGCGTCTAT GGGATTTTCC CTCAGCTGGG TAAGAACGGT ATCGTCGAAT ACAATGTGAT CTCCGGTATC GAAGATGCAG CCATCTATGT CGGCATGAGT GACAACATCC ATGTGGCCTA TAACGATGTG TTCGACAGCG TCGCCGGCAT CGAGATCGAA AATTCACGCC ATAGCATAGT CGAAAATAAC TTTGTCCATA ACAATACCGG CGGGATCTTA GCCTTTATCA CGCCGGGGCT TCCCATCAAG ACCACCACAG ATGTGATCAT TCGTAATAAC TTTATCACGG GAAATAATCA TAAAAACTTC GGTGCCCCCG GCTCAACCGT TGGCGGGATC CCGGCGGGTA CAGGGATCTT AGTTATGGCT GCGGACGAGG TGGTCATAGA GGGAAATATT ATCTCAGATA ATAAGACTGC GGGGATCTTA ATCACAGATC ACCATAACGC ACCCAATGTC ACCATCGACC CTGAGTCCGA TCCAAATCCG GATAACATTA TGATCTTAGA CAATATGATG ATCAACAATG GTTATGACAC CATAGATGAG GTCAAGGCAT TGATGTTGAC TGAGTTTAAA CAGGGCAACG CCGATATCGT TCGGGTTGGT AACAGCAGCA GTAGCTGTAT CATCAACCGC CACCGCTACA CGACAGTTGG CGTTAGCAGT TGGGATGAAT GTAGCTTCAC CCACACCTCA GGCATTGACA GCTATCTTTT GGATGAGCCG GTCCCCCCTC GTAACATTGA CCCATCCGAA CGTGGGAAAG TGGTCTACAT GGGAATTTGT GCAGGCTGTC ATACCTATAC AGGCAGGATG ATCGGCCCAC CGGTACAGAT CATTCAGGCG TTATATATGG ATAATCCTCA GGGAATCGCC GACTTTATCG CCCACCCGAT TAAGAAACGA GAGGACTATC CTGAAATGCC GCCTCAGGAC TACCTTGATG CAGAGACTCG TCTCGCTGCC GCTAAATATA TGCTAAGCCG TAAGGGATAA
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Protein sequence | MKSGKIITTI LIVAAFTGGA YYGGNSSAPT ITDSKGGASY GGGYDRSADS DASSSTQVGK KSAAAKRTKQ GKTHVIDDGD SIMEAVKLAK PGDTIQIMPG TYHETVYIDK DDIHIIGVIK EGQRATLDGQ NKLNDAILYS GNNVIVENLT ITRYKGNGIM GQAGNNFEIR NNIIVDTGVY GIFPQLGKNG IVEYNVISGI EDAAIYVGMS DNIHVAYNDV FDSVAGIEIE NSRHSIVENN FVHNNTGGIL AFITPGLPIK TTTDVIIRNN FITGNNHKNF GAPGSTVGGI PAGTGILVMA ADEVVIEGNI ISDNKTAGIL ITDHHNAPNV TIDPESDPNP DNIMILDNMM INNGYDTIDE VKALMLTEFK QGNADIVRVG NSSSSCIINR HRYTTVGVSS WDECSFTHTS GIDSYLLDEP VPPRNIDPSE RGKVVYMGIC AGCHTYTGRM IGPPVQIIQA LYMDNPQGIA DFIAHPIKKR EDYPEMPPQD YLDAETRLAA AKYMLSRKG
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