| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1105 |
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| Symbol | |
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| ID | 5612150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1315279 |
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| End bp | 1316913 |
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| Gene Length | 1635 bp |
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| Protein Length | 544 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640931954 |
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| Product | alkaline phosphatase |
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| Protein accession | YP_001472844 |
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| Protein GI | 157374244 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.377732 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTCGG TGCCAAAGCT TCCCGAAGAA AATCAGCTAG CTAACGAAGA GTTATTTGGC
CACCCCAAAG GCTTGTATAT CTGTTTTACC ACAGAGATGT GGGAGCGGTT TTCTTTCTAT
GGCATGAAGT ATCTGCTACT CCTCTATCTG ACCAAGTATC ATCTGTTTTC CGATGGTGCC
GGGTTGGAAG TCTTAGGGGC CTATGCCGGC CTGGTTTACT CATTACCGGT TATCGGTGGC
ATGTTGGCCG ACCGATATTT AGGCATGCGT AAGGCTGTCA TATTCGGCGG AATATTACTC
TGCATAGGGC ACTTTTTGAT GGCGGTTGAA GGTCATCAGG CCATACAGTA CGCCGCCGGT
ACTGAGCTCA TCTCAGATAT CACACTCAGC GACGGAACAA CTCTGGTGGC CGGAACTGTG
TTGACCGAAA CGATTCAAAT TCGTGATTTA GCTGCCCTTA ACATCTTTTA TCTGGCCTTA
GCCTTGATTG TTGTCGGTGT CGGTTTTTTA AAACCCAATA TCTCCACCAT AGTGGGTCAG
CTCTATGACA AAGATGATGT CCGTCGAGAC TCCGGCTTCA CCATTTTCTA TATGGGGATC
AATATCGGTG CCTTCGCCGC GACCATTATC TGTGTCTATC TGGGCGAGAC ATTCGGCTGG
GGCTATGGCT TCGGCAGCGC GGGGGTCGGC ATGCTGTTCG GTTTATTTAC CTTCCTCAAG
GGGCAAAAAT ACCTGAAGGG TTTAGCCGAA CCCAGCGATC CGCAGCTTCT GACAGAGAAA
GTGCTGGGGC CCATCAATAA GGAACAGCTT ATCTACCTCA TAGCTTTGAT GAGTCTGGGG
CTGATCTGGC TGATGCTCCA ACATGAAACC CTTGTTTTTG CCGCTCAGCA GGTCGTATTA
CTGGCAGCCG GCATAGGGTT AATTGGCTAT GCCGCGTTCA AAGGCACCCG GGAGGAGATG
CACCAGATGA GCGTACTCAT GGTGCTCATC GCATCGACGA TAGTCTTCTG GGCACTGTTT
GAGCAGGCGG CTGGCTCGAT GACCCTCTTC GCCGATAGGG TGATCGACCG CAATATCCTG
AATATTGAGA TAGCAGCGGG TCAGTTTGGC TCCCTCAATG CCGGATTTAT CATGCTACTG
GCCCTGCCCT TTGCGGCACT TTGGGTCTGG CTCGACAAGT TCAACCTGAA CCCCAATATC
CCGGTAAAGT TTGGCTTAGG TATCATTCAG GCGGGACTGG GATTCGGTGT ACTGGTTCTG
GGATCCAATT TCCCCGATGA AGCGGGAAAA ATGAGTCTAT GGTGGCTGGT GCTGGCCTAC
CTGCTCCATA CAACGGGTGA ACTATGCCTG TCGCCGGTGG GACTGTCTGC GGTGACAAAA
CTGGCTATTC ATAAGGTGGT CGGTCTGTCT ATGGGGGTCT GGTTTCTGGC CATGGCGCTA
TCGGAAACCT TGGCGATGCG CTTAGGACAG CTCACGGCCA TCGATATGTC CAGCCCTCAA
GGCATGGACA TAGCTCAGAC TAGTGCGACT TACATACAGC TATTTGAATT CTTAATGTGG
ACCGGCATCA TCTGTGGTGC CTTCATCATT ATTATCTCAC CGATACTGAC GCGGGGCATG
CATGGGGTCC GTTAA
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| Protein sequence | MESVPKLPEE NQLANEELFG HPKGLYICFT TEMWERFSFY GMKYLLLLYL TKYHLFSDGA
GLEVLGAYAG LVYSLPVIGG MLADRYLGMR KAVIFGGILL CIGHFLMAVE GHQAIQYAAG
TELISDITLS DGTTLVAGTV LTETIQIRDL AALNIFYLAL ALIVVGVGFL KPNISTIVGQ
LYDKDDVRRD SGFTIFYMGI NIGAFAATII CVYLGETFGW GYGFGSAGVG MLFGLFTFLK
GQKYLKGLAE PSDPQLLTEK VLGPINKEQL IYLIALMSLG LIWLMLQHET LVFAAQQVVL
LAAGIGLIGY AAFKGTREEM HQMSVLMVLI ASTIVFWALF EQAAGSMTLF ADRVIDRNIL
NIEIAAGQFG SLNAGFIMLL ALPFAALWVW LDKFNLNPNI PVKFGLGIIQ AGLGFGVLVL
GSNFPDEAGK MSLWWLVLAY LLHTTGELCL SPVGLSAVTK LAIHKVVGLS MGVWFLAMAL
SETLAMRLGQ LTAIDMSSPQ GMDIAQTSAT YIQLFEFLMW TGIICGAFII IISPILTRGM
HGVR
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