Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1093 |
Symbol | |
ID | 5612179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1296854 |
End bp | 1298563 |
Gene Length | 1710 bp |
Protein Length | 569 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931942 |
Product | Cl-channel, voltage-gated family protein |
Protein accession | YP_001472832 |
Protein GI | 157374232 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0038] Chloride channel protein EriC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00228292 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.00554461 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGCGACACA GATTAAAGAA GACACATACC CAATGGTTGA GATACCAGAG AACGGAACTT AAAGATACTC TTTCTCAAGC TAAGATCAGT CTGCAACTCT CTCTGCTCGC TCTGTTATTT GCCCTGATGG CCTCGGGTGT GATCTTGCTG TTCCGGCTAT TACTTATCTG GATAAACACC TACACAGAAA CCAGTGAGCT GGATTTTACT GAGATCATCG ACGACTGGCG AGTGTTATTA CCACTGATTG GCTCAATTTT AATCTGGTTA GTCGCACGAA TGGGATCTAA ACGCTATAGG CGGATGGGTA TCGCCTATGT TTTACACAGA ATTAAACTTC ACCACGGTAA GTTGCCTCTG CAGTCGGCAC CCAGTCAGTT TTTCCAGGCC CTGTTCGCCC TGGTCACTAA CTTTTCTGTC GGCCGGGAAG GCCCGGTGAT CCATTTAGGC GCTGTTACCG CCAGCGTATT AGCTGAAAAA TTTAAACTGC CGGATAACAG TGTTCGTATC ATGTGTGCCA GTGGTATCGC TGCAGGTATC GCCGCCACCT TCAATACACC ACTTGCGGCA GTCATCTTCG TTTTCGAGGT GATCTTGCGC GAGTACAAGG TTCACTATTT CTTTCCCATC ATACTCGCCG CTATCTGCGG GGCAGTATCA TCGCAACTCG TCTTTGGCAA CATTCACGAA TACGAGCAGA TTGGCGTTAT CCATATTCCG CTCTCCCAAT ACCCGGTTCT GGCAATAAGT GGTGTGCTTT TAGGTTGTGT GGCCGCCCTA TTTAACTTCT CTTTGCTCAA GGTTACGGCC ACGGGTCAAC ACTGGCCACT GCTAAACCGG GTATTACTGG CGGGGGTGAT CACCACTATC GTCGGCATCT TTCTTCCCGA GTCTCTTGGC AGTGGTGAGC TTGCCATCGA ACAAGCGATA AGCGAGCATC CCAGCATTCT ATTTTTAATC GCGCTGTTGA TTGGAAAAAT CATCGCCACC ATCGCCGCCA TAGGCCTCGG GATCCCCGGT GGTATCATCG GACCTATTTT TGGCATAGGT GCACTGCTTG GCGCCATTTT GGCCCTCGCC AGCGCGGCGA TATTCCCGTC TGTCGCTTCC TATATCGGCC TCTATACCAT CATAGGTATG ACCGCAATCA TGGGGGTCTG TCTCAGCGCA CCACTTGCAG CCCTGGTCGC CCTGCTCGAG ATGACGAACA ACCCCTCTAT CATATTGCCG GCCATGTTCG TTAGCATCCC GGCCTTTCTC ATCGCTCATC AAGGCTTTAA GTCAAAATCA CTCTTCCTGC AACAGCTAGA GATCATGGGC TTAGGCTATA AGGTCTCCCC CCTCGAACTT GGATTACAGA AACGTGGCGT CAGGGCGTTG ATGGATAAGA GGCTGGTTAT CGTAAAGGAT GACGATGAAC TGTTACTCGA GGTGCTCAAG CGCGCCGCGG GTCGTTCAGT ATTAGTCCGG AATGCACAAG GTCAAATGGA GATGCTACAA CTCGAGATGC AACTTCATGA TCATGAGAGC TCCCTCACCC GGCATCCTAT CGAGGGACTC CCCGATACGG CGACGCTGAA TGAAGTCTAC GGCATTCTCT CACGGGATCG ACGCGGTGAG GTATATGTCT ATCAAGACAA AAGCGATAAT ATCGTCGGGG TGATCAGCTG GGCATCTTTG CAACAAGAGA TACGTTCCGG ACAGGTTTGA
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Protein sequence | MRHRLKKTHT QWLRYQRTEL KDTLSQAKIS LQLSLLALLF ALMASGVILL FRLLLIWINT YTETSELDFT EIIDDWRVLL PLIGSILIWL VARMGSKRYR RMGIAYVLHR IKLHHGKLPL QSAPSQFFQA LFALVTNFSV GREGPVIHLG AVTASVLAEK FKLPDNSVRI MCASGIAAGI AATFNTPLAA VIFVFEVILR EYKVHYFFPI ILAAICGAVS SQLVFGNIHE YEQIGVIHIP LSQYPVLAIS GVLLGCVAAL FNFSLLKVTA TGQHWPLLNR VLLAGVITTI VGIFLPESLG SGELAIEQAI SEHPSILFLI ALLIGKIIAT IAAIGLGIPG GIIGPIFGIG ALLGAILALA SAAIFPSVAS YIGLYTIIGM TAIMGVCLSA PLAALVALLE MTNNPSIILP AMFVSIPAFL IAHQGFKSKS LFLQQLEIMG LGYKVSPLEL GLQKRGVRAL MDKRLVIVKD DDELLLEVLK RAAGRSVLVR NAQGQMEMLQ LEMQLHDHES SLTRHPIEGL PDTATLNEVY GILSRDRRGE VYVYQDKSDN IVGVISWASL QQEIRSGQV
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